BMRB Entry 11107

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PDB ID: 2diz
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11107
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the third thioredoxin domain of human Thioredoxin domain-containing protein 5

Deposition date:

2010-02-18

Original release date:

2011-02-18

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the third thioredoxin domain of human Thioredoxin domain-containing protein 5" .

Assembly members:

Assembly members:
3rd thioredoxin domain, polymer, 117 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050302-28

Entity Sequences (FASTA):

Entity Sequences (FASTA):
3rd thioredoxin domain: GSSGSSGTVLALTENNFDDT IAEGITFIKFYAPWCGHCKT LAPTWEELSKKEFPGLAGVK IAEVDCTAERNICSKYSVRG YPTLLLFRGGKKVSEHSGGR DLDSLHRFVLSQAKDEL

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	514
15N chemical shifts	115
1H chemical shifts	792

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	3rd thioredoxin domain	1

Entities:

Entity 1, 3rd thioredoxin domain 117 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

VAL

LEU

2

ALA

LEU

THR

GLU

ASN

PHE

ASP

THR

3

ILE

ALA

GLU

GLY

ILE

THR

PHE

ILE

LYS

PHE

4

TYR

ALA

PRO

TRP

CYS

GLY

HIS

CYS

LYS

THR

5

LEU

ALA

PRO

THR

TRP

GLU

LEU

SER

LYS

6

LYS

GLU

PHE

PRO

GLY

LEU

ALA

GLY

VAL

LYS

7

ILE

ALA

GLU

VAL

ASP

CYS

THR

ALA

GLU

ARG

8

ASN

ILE

CYS

SER

LYS

TYR

SER

VAL

ARG

GLY

9

TYR

PRO

THR

LEU

PHE

ARG

GLY

10

LYS

VAL

SER

GLU

HIS

SER

GLY

ARG

11

ASP

LEU

ASP

SER

LEU

HIS

ARG

PHE

VAL

LEU

12

SER

GLN

ALA

LYS

ASP

GLU

LEU

Samples:

sample_1: Thioredoxin domain, [U-13C; U-15N], 1.3 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-SEPARATED NOESY	sample_1	isotropic	condition_1
3D 13C-SEPARATED NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.955, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz