BMRB Entry 11105

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PDB ID: 2dj0
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11105
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the thioredoxin domain of human Thioredoxin-related transmembrane protein 2

Deposition date:

2010-02-18

Original release date:

2011-02-18

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the thioredoxin domain of human Thioredoxin-related transmembrane protein 2" .

Assembly members:

Assembly members:
Thioredoxin domain, polymer, 137 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050314-13

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Thioredoxin domain: GSSGSSGYIKYFNDKTIDEE LERDKRVTWIVEFFANWSND CQSFAPIYADLSLKYNCTGL NFGKVDVGRYTDVSTRYKVS TSPLTKQLPTLILFQGGKEA MRRPQIDKKGRAVSWTFSEE NVIREFNLNELSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	609
15N chemical shifts	139
1H chemical shifts	926

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Thioredoxin domain	1

Entities:

Entity 1, Thioredoxin domain 137 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

TYR

ILE

LYS

2

TYR

PHE

ASN

ASP

LYS

THR

ILE

ASP

GLU

3

LEU

GLU

ARG

ASP

LYS

ARG

VAL

THR

TRP

ILE

4

VAL

GLU

PHE

ALA

ASN

TRP

SER

ASN

ASP

5

CYS

GLN

SER

PHE

ALA

PRO

ILE

TYR

ALA

ASP

6

LEU

SER

LEU

LYS

TYR

ASN

CYS

THR

GLY

LEU

7

ASN

PHE

GLY

LYS

VAL

ASP

VAL

GLY

ARG

TYR

8

THR

ASP

VAL

SER

THR

ARG

TYR

LYS

VAL

SER

9

THR

SER

PRO

LEU

THR

LYS

GLN

LEU

PRO

THR

10

LEU

ILE

LEU

PHE

GLN

GLY

LYS

GLU

ALA

11

MET

ARG

PRO

GLN

ILE

ASP

LYS

GLY

12

ARG

ALA

VAL

SER

TRP

THR

PHE

SER

GLU

13

ASN

VAL

ILE

ARG

GLU

PHE

ASN

LEU

ASN

GLU

14

LEU

SER

GLY

PRO

SER

GLY

Samples:

sample_1: Thioredoxin domain, [U-13C; U-15N], 0.4 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-SEPARATED NOESY	sample_1	isotropic	condition_1
3D 13C-SEPARATED NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.955, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz

PDB	2DJ0
DBJ	BAC11569 BAD96778 BAE01711 BAG35827 BAH12650
EMBL	CAH89604
GB	AAD27740 AAG43122 AAH00666 AAH83678 AAH93062
REF	NP_001007644 NP_001127174 NP_001137484 NP_001182688 NP_001272093
SP	Q2TBU2 Q4R5B4 Q5RF53 Q5XIK2 Q9Y320
AlphaFold	Q2TBU2 Q4R5B4 Q5RF53 Q5XIK2 Q9Y320