BMRB Entry 11098

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PDB ID: 2ede
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11098
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the sixth fibronectin type III domain of human Netrin receptor DCC

Deposition date:

2010-02-19

Original release date:

2011-02-17

Authors:

Tochio, N.; Koshiba, S.; Tomizawa, T.; Yoneyama, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Tomizawa, T.; Yoneyama, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the sixth fibronectin type III domain of human Netrin receptor DCC" .

Assembly members:

Assembly members:
sixth fn3 domain, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050905-24

Entity Sequences (FASTA):

Entity Sequences (FASTA):
sixth fn3 domain: GSSGSSGPTSAPKDLTVITR EGKPRAVIVSWQPPLEANGK ITAYILFYTLDKNIPIDDWI METISGDRLTHQIMDLNLDT MYYFRIQARNSKGVGPLSDP ILFRTLKVSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	501
15N chemical shifts	109
1H chemical shifts	784

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	sixth fn3 domain	1

Entities:

Entity 1, sixth fn3 domain 114 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

THR

SER

2

ALA

PRO

LYS

ASP

LEU

THR

VAL

ILE

THR

ARG

3

GLU

GLY

LYS

PRO

ARG

ALA

VAL

ILE

VAL

SER

4

TRP

GLN

PRO

LEU

GLU

ALA

ASN

GLY

LYS

5

ILE

THR

ALA

TYR

ILE

LEU

PHE

TYR

THR

LEU

6

ASP

LYS

ASN

ILE

PRO

ILE

ASP

TRP

ILE

7

MET

GLU

THR

ILE

SER

GLY

ASP

ARG

LEU

THR

8

HIS

GLN

ILE

MET

ASP

LEU

ASN

LEU

ASP

THR

9

MET

TYR

PHE

ARG

ILE

GLN

ALA

ARG

ASN

10

SER

LYS

GLY

VAL

GLY

PRO

LEU

SER

ASP

PRO

11

ILE

LEU

PHE

ARG

THR

LEU

LYS

VAL

SER

GLY

12

PRO

SER

GLY

Samples:

sample_1: sixth fn3 domain, [U-13C; U-15N], 1.3 mM; d-Tris-HCl, [U-2H], 20 mM; sodium chloride 100 mM; d-DTT, [U-2H], 1 mM; sodium azide 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 1H-15N NOESY	sample_1	isotropic	condition_1
3D 1H-13C NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMNMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.955, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz