BMRB Entry 11054

Name: Solution structure of a novel insect chemokine isolated from integument
Published: 2009-10-14

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PDB ID: 2rps
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR11054
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a novel insect chemokine isolated from integument

Deposition date:

2008-07-27

Original release date:

2009-10-14

Authors:

Kamiya, Masakatsu; Nakatogawa, Shin-ichi; Oda, Yasunori; Kamijima, Tatsuro; Aizawa, Tomoyasu; Demura, Makoto; Hayakawa, Yoichi; Kawano, Keiichi

Citation:

Citation: Nakatogawa, Shin-ichi; Oda, Yasunori; Kamiya, Masakatsu; Kamijima, Tatsuro; Aizawa, Tomoyasu; Clark, Kevin; Demura, Makoto; Kawano, Keiichi; Strand, Michael; Hayakawa, Yoichi. "A novel peptide mediates aggregation and migration of hemocytes from an insect" Curr. Biol. 19, 779-785 (2009).
PubMed: 19375321

Assembly members:

Assembly members:
insect chemokine, polymer, 32 residues, 3545.022 Da.

Natural source:

Natural source: Common Name: northern armyworm Taxonomy ID: 271217 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mythimna separata

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET32b+

Entity Sequences (FASTA):

Entity Sequences (FASTA):
insect chemokine: SVQILRCPDGMQMLRSGQCV ATTEPPFDPDSY

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
15N chemical shifts	32
1H chemical shifts	158

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	insect chemokine	1

Entities:

Entity 1, insect chemokine 32 residues - 3545.022 Da.

1

SER

VAL

GLN

ILE

LEU

ARG

CYS

PRO

ASP

GLY

2

MET

GLN

MET

LEU

ARG

SER

GLY

GLN

CYS

VAL

3

ALA

THR

GLU

PRO

PHE

ASP

PRO

ASP

4

SER

TYR

Samples:

sample_1: insect chemokine1 – 3 mM; DSS 10 uM

sample_2: entity, [U-15N], 1 – 3 mM; DSS 10 uM

sample_conditions_1: ionic strength: 0 M; pH: 5.1; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_2	isotropic	sample_conditions_1
3D HNHA	sample_2	isotropic	sample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment

Molmol, Koradi, Billeter and Wuthrich - data analysis

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - structure solution

ProcheckNMR, Laskowski and MacArthur - data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis

NMR spectrometers:

Bruker DRX 500 MHz
JEOL ECA 600 MHz

PDB	2RPS
DBJ	BAH03491