BMRB Entry 10306

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PDB ID: 2yrm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10306
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the 1st zf-C2H2 domain from Human B-cell lymphoma 6 protein

Deposition date:

2009-03-10

Original release date:

2010-03-11

Authors:

Tomizawa, T.; Sato, M.; Saito, K.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tomizawa, T.; Sato, M.; Saito, K.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Solution structure of the 1st zf-C2H2 domain from Human B-cell lymphoma 6 protein" .

Assembly members:

Assembly members:
zf-C2H2 domain, polymer, 43 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell-free synthesis Vector: P070129-01

Entity Sequences (FASTA):

Entity Sequences (FASTA):
zf-C2H2 domain: GSSGSSGNGAFFCNECDCRF SEEASLKRHTLQTHSDKSGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	148
15N chemical shifts	35
1H chemical shifts	214

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	zf-C2H2 domain	1
2	ZINC ION	2

Entities:

Entity 1, zf-C2H2 domain 43 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASN

GLY

ALA

2

PHE

CYS

ASN

GLU

CYS

ASP

CYS

ARG

PHE

3

SER

GLU

ALA

SER

LEU

LYS

ARG

HIS

THR

4

LEU

GLN

THR

HIS

SER

ASP

LYS

SER

GLY

PRO

5

SER

GLY

Entity 2, ZINC ION - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: zf-C2H2 domain, [U-13C; U-15N], 1.17 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9825, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2YRM
REF	XP_012383937