BMRB Entry 10292

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PDB ID: 2dmp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10292
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the third homeobox domain of Zinc fingers and homeoboxes protein 2

Deposition date:

2008-12-17

Original release date:

2009-12-17

Authors:

Ohnishi, S.; Sasagawa, A.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Ohnishi, S.; Sasagawa, A.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the third homeobox domain of Zinc fingers and homeoboxes protein 2" .

Assembly members:

Assembly members:
homeobox domain, polymer, 89 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050404-24

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGAYPDFAPQKFKEK TQGQVKILEDSFLKSSFPTQ AELDRLRVETKLSRREIDSW FSERRKLRDSMEQAVLDSMG SGKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	354
15N chemical shifts	78
1H chemical shifts	506

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	homeobox domain	1

Entities:

Entity 1, homeobox domain 89 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ALA

TYR

PRO

2

ASP

PHE

ALA

PRO

GLN

LYS

PHE

LYS

GLU

LYS

3

THR

GLN

GLY

GLN

VAL

LYS

ILE

LEU

GLU

ASP

4

SER

PHE

LEU

LYS

SER

PHE

PRO

THR

GLN

5

ALA

GLU

LEU

ASP

ARG

LEU

ARG

VAL

GLU

THR

6

LYS

LEU

SER

ARG

GLU

ILE

ASP

SER

TRP

7

PHE

SER

GLU

ARG

LYS

LEU

ARG

ASP

SER

8

MET

GLU

GLN

ALA

VAL

LEU

ASP

SER

MET

GLY

9

SER

GLY

LYS

SER

GLY

PRO

SER

GLY

Samples:

sample_1: homeobox domain, [U-13C; U-15N], 1.2 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.965, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz