BMRB Entry 10288

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PDB ID: 2da6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10288
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the homeobox domain of Hepatocyte nuclear factor 1-beta (HNF-1beta)

Deposition date:

2008-12-17

Original release date:

2009-12-17

Authors:

Ohnishi, S.; Kigawa, T.; Sato, M.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Ohnishi, S.; Kigawa, T.; Sato, M.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the homeobox domain of Hepatocyte nuclear factor 1-beta (HNF-1beta)" .

Assembly members:

Assembly members:
homeobox domain, polymer, 102 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050404-17

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGRNRFKWGPASQQI LYQAYDRQKNPSKEEREALV EECNRAECLQRGVSPSKAHG LGSNLVTEVRVYNWFANRRK EEAFRQKLAMDAYSSNSGPS SG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	401
15N chemical shifts	99
1H chemical shifts	623

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	homeobox domain	1

Entities:

Entity 1, homeobox domain 102 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ARG

ASN

ARG

2

PHE

LYS

TRP

GLY

PRO

ALA

SER

GLN

ILE

3

LEU

TYR

GLN

ALA

TYR

ASP

ARG

GLN

LYS

ASN

4

PRO

SER

LYS

GLU

ARG

GLU

ALA

LEU

VAL

5

GLU

CYS

ASN

ARG

ALA

GLU

CYS

LEU

GLN

6

ARG

GLY

VAL

SER

PRO

SER

LYS

ALA

HIS

GLY

7

LEU

GLY

SER

ASN

LEU

VAL

THR

GLU

VAL

ARG

8

VAL

TYR

ASN

TRP

PHE

ALA

ASN

ARG

LYS

9

GLU

ALA

PHE

ARG

GLN

LYS

LEU

ALA

MET

10

ASP

ALA

TYR

SER

ASN

SER

GLY

PRO

SER

11

SER

GLY

Samples:

sample_1: homeobox domain, [U-13C; U-15N], 1.2 mM; d-TrisHCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2DA6 2H8R
DBJ	BAA77718 BAA77719 BAA77720 BAA77721 BAB23604
EMBL	CAA39358 CAA39886 CAA41652 CAA49356 CAB59223
GB	AAC63388 AAH17714 AAH25189 AAH81826 AAI29148
REF	NP_000449 NP_001124797 NP_001159395 NP_001179784 NP_001181477
SP	A1L1N5 P23899 P27889 P35680 Q03365
TPG	DAA19061 DAA19062
AlphaFold	A1L1N5 P23899 P27889 P35680 Q03365