BMRB Entry 10282

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PDB ID: 2cuf
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10282
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the homeobox domain of the human hypothetical protein FLJ21616

Deposition date:

2008-12-17

Original release date:

2009-12-17

Authors:

Ohnishi, S.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Ohnishi, S.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the homeobox domain of the human hypothetical protein FLJ21616" .

Assembly members:

Assembly members:
homeobox domain, polymer, 95 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P041004-01

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGRGSRFTWRKECLA VMESYFNENQYPDEAKREEI ANACNAVIQKPGKKLSDLER VTSLKVYNWFANRRKEIKRR ANIAAILESSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	380
15N chemical shifts	89
1H chemical shifts	581

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	homeobox domain	1

Entities:

Entity 1, homeobox domain 95 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ARG

GLY

SER

2

ARG

PHE

THR

TRP

ARG

LYS

GLU

CYS

LEU

ALA

3

VAL

MET

GLU

SER

TYR

PHE

ASN

GLU

ASN

GLN

4

TYR

PRO

ASP

GLU

ALA

LYS

ARG

GLU

ILE

5

ALA

ASN

ALA

CYS

ASN

ALA

VAL

ILE

GLN

LYS

6

PRO

GLY

LYS

LEU

SER

ASP

LEU

GLU

ARG

7

VAL

THR

SER

LEU

LYS

VAL

TYR

ASN

TRP

PHE

8

ALA

ASN

ARG

LYS

GLU

ILE

LYS

ARG

9

ALA

ASN

ILE

ALA

ILE

LEU

GLU

SER

10

GLY

PRO

SER

GLY

Samples:

sample_1: homeobox domain, [U-13C; U-15N], 1.40 mM; d-TrisHCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert. P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2CUF 4J19
DBJ	BAB15099 BAC35118 BAC40961 BAF83372 BAG58297
GB	AAH02212 AAH09259 AAH51457 AAH69242 AAH77394
REF	NP_001086952 NP_001087099 NP_001129198 NP_001179100 NP_001264645
SP	Q6NT76 Q8BJA3
TPG	DAA27058
AlphaFold	Q6NT76 Q8BJA3