BMRB Entry 10280

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10280
MolProbity Validation Chart

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Title:
Solution structure of the PH domain of Oxysterol binding protein-related protein 11 from human
Deposition date:
2008-12-15
Original release date:
2009-12-14
Authors:
Li, H.; Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Li, H.; Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the PH domain of Oxysterol binding protein-related protein 11 from human"  .

Assembly members:

Assembly members:
PH domain, polymer, 120 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P050404-14

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PH domain: GSSGSSGENVYGYLMKYTNL VTGWQYRFFVLNNEAGLLEY FVNEQSRNQKPRGTLQLAGA VISPSDEDSHTFTVNAASGE QYKLRATDAKERQHWVSRLQ ICTQHHTEAIGKNNSGPSSG

Data sets:
Data typeCount
13C chemical shifts497
15N chemical shifts123
1H chemical shifts766

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1PH domain1

Entities:

Entity 1, PH domain 120 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYGLUASNVAL
2   TYRGLYTYRLEUMETLYSTYRTHRASNLEU
3   VALTHRGLYTRPGLNTYRARGPHEPHEVAL
4   LEUASNASNGLUALAGLYLEULEUGLUTYR
5   PHEVALASNGLUGLNSERARGASNGLNLYS
6   PROARGGLYTHRLEUGLNLEUALAGLYALA
7   VALILESERPROSERASPGLUASPSERHIS
8   THRPHETHRVALASNALAALASERGLYGLU
9   GLNTYRLYSLEUARGALATHRASPALALYS
10   GLUARGGLNHISTRPVALSERARGLEUGLN
11   ILECYSTHRGLNHISHISTHRGLUALAILE
12   GLYLYSASNASNSERGLYPROSERSERGLY

Samples:

sample_1: PH domain, [U-13C; U-15N], 1.16 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAF85391 BAG10618
GB AAH35278 AAH65213 AAI68952 AAK31141 AAL40667
REF NP_001100560 NP_001179937 NP_073613 NP_789810 XP_001114179
SP Q8CI95 Q9BXB4
TPG DAA33462
AlphaFold Q8CI95 Q9BXB4

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks