BMRB Entry 10275

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PDB ID: 2yu0
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10275
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of the PAAD_DAPIN domain of mus musculus interferon-activatable protein 205

Deposition date:

2008-12-15

Original release date:

2009-12-14

Authors:

Sato, M.; Tochio, N.; Koshiba, S.; Watanabe, M.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Tochio, N.; Koshiba, S.; Watanabe, M.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Solution structures of the PAAD_DAPIN domain of mus musculus interferon-activatable protein 205" .

Assembly members:

Assembly members:
Interferon-activable protein 205, polymer, 94 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P051212-10

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Interferon-activable protein 205: GSSGSSGIVLLRGLECINKH YFSLFKSLLARDLNLERDNQ EQYTTIQIANMMEEKFPADS GLGKLIEFCEEVPALRKRAE ILKKERSESGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	381
15N chemical shifts	90
1H chemical shifts	645

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Interferon-activable protein 205	1

Entities:

Entity 1, Interferon-activable protein 205 94 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ILE

VAL

LEU

2

LEU

ARG

GLY

LEU

GLU

CYS

ILE

ASN

LYS

HIS

3

TYR

PHE

SER

LEU

PHE

LYS

SER

LEU

ALA

4

ARG

ASP

LEU

ASN

LEU

GLU

ARG

ASP

ASN

GLN

5

GLU

GLN

TYR

THR

ILE

GLN

ILE

ALA

ASN

6

MET

GLU

LYS

PHE

PRO

ALA

ASP

SER

7

GLY

LEU

GLY

LYS

LEU

ILE

GLU

PHE

CYS

GLU

8

GLU

VAL

PRO

ALA

LEU

ARG

LYS

ARG

ALA

GLU

9

ILE

LEU

LYS

GLU

ARG

SER

GLU

SER

GLY

10

PRO

SER

GLY

Samples:

sample_1: Interferon-activable protein 205, [U-13C; U-15N], 0.5 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz

PDB	2YU0
DBJ	BAC37930 BAE29634 BAE31415 BAE31495 BAE38635
EMBL	CAJ18559
GB	AAA39313 AAB26880 AAH10546 AAI32315 AAI32317
PIR	I56329
REF	NP_001028622 NP_001288674 NP_032355 XP_006496738
SP	P15092 Q08619
AlphaFold	P15092 Q08619