BMRB Entry 10263

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PDB ID: 2dn7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10263
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of the 6th fn3 domain of human receptor-type tyrosine-protein phosphatase F

Deposition date:

2008-11-21

Original release date:

2009-11-24

Authors:

Sato, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the 6th fn3 domain of human receptor-type tyrosine-protein phosphatase F" .

Assembly members:

Assembly members:
Fibronectin type III domain, polymer, 107 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050719-01

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Fibronectin type III domain: GSSGSSGPGRPTMMISTTAM NTALLQWHPPKELPGELLGY RLQYCRADEARPNTIDFGKD DQHFTVTGLHKGTTYIFRLA AKNRAGLGEEFEKEIRTPED LSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	447
15N chemical shifts	103
1H chemical shifts	695

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Fibronectin type III domain	1

Entities:

Entity 1, Fibronectin type III domain 107 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

GLY

ARG

2

PRO

THR

MET

ILE

SER

THR

ALA

MET

3

ASN

THR

ALA

LEU

GLN

TRP

HIS

PRO

4

LYS

GLU

LEU

PRO

GLY

GLU

LEU

GLY

TYR

5

ARG

LEU

GLN

TYR

CYS

ARG

ALA

ASP

GLU

ALA

6

ARG

PRO

ASN

THR

ILE

ASP

PHE

GLY

LYS

ASP

7

ASP

GLN

HIS

PHE

THR

VAL

THR

GLY

LEU

HIS

8

LYS

GLY

THR

TYR

ILE

PHE

ARG

LEU

ALA

9

ALA

LYS

ASN

ARG

ALA

GLY

LEU

GLY

GLU

10

PHE

GLU

LYS

GLU

ILE

ARG

THR

PRO

GLU

ASP

11

LEU

SER

GLY

PRO

SER

GLY

Samples:

sample_1: fn3 domain, [U-13C; U-15N], 1 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz

PDB	2DN7
DBJ	BAG54183
EMBL	CAD97607