BMRB Entry 10259

Name: Solution structures of the PDZ domain of human unnamed protein product
Published: 2009-11-24

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PDB ID: 2djt
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10259
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of the PDZ domain of human unnamed protein product

Deposition date:

2008-11-21

Original release date:

2009-11-24

Authors:

Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the PDZ domain of human unnamed protein product" .

Assembly members:

Assembly members:
PDZ domain, polymer, 104 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: Cell free synthesis Vector: P050829-16

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGQASGHFSVELVRG YAGFGLTLGGGRDVAGDTPL AVRGLLKDGPAQRCGRLEVG DLVLHINGESTQGLTHAQAV ERIRAGGPQLHLVIRRPLSG PSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	409
15N chemical shifts	98
1H chemical shifts	646

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ domain	1

Entities:

Entity 1, PDZ domain 104 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

GLN

ALA

SER

2

GLY

HIS

PHE

SER

VAL

GLU

LEU

VAL

ARG

GLY

3

TYR

ALA

GLY

PHE

GLY

LEU

THR

LEU

GLY

4

GLY

ARG

ASP

VAL

ALA

GLY

ASP

THR

PRO

LEU

5

ALA

VAL

ARG

GLY

LEU

LYS

ASP

GLY

PRO

6

ALA

GLN

ARG

CYS

GLY

ARG

LEU

GLU

VAL

GLY

7

ASP

LEU

VAL

LEU

HIS

ILE

ASN

GLY

GLU

SER

8

THR

GLN

GLY

LEU

THR

HIS

ALA

GLN

ALA

VAL

9

GLU

ARG

ILE

ARG

ALA

GLY

PRO

GLN

LEU

10

HIS

LEU

VAL

ILE

ARG

PRO

LEU

SER

GLY

11

PRO

SER

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.932, Kobayashi, N. - data analysis

CYANA v2.0.17, Guentert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 700 MHz