BMRB Entry 10248

Name: Solution Structure of the HMG_box Domain of Murine Bobby Sox Homolog
Published: 2009-11-20

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PDB ID: 1wz6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10248
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the HMG_box Domain of Murine Bobby Sox Homolog

Deposition date:

2008-11-20

Original release date:

2009-11-20

Authors:

Li, H.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Li, H.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the HMG_box Domain of Murine Bobby Sox Homolog" .

Assembly members:

Assembly members:
HMG_box domain, polymer, 82 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: Cell free synthesis Vector: P040719-04

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HMG_box domain: GSSGSSGARRPMNAFLLFCK RHRSLVRQEHPRLDNRGATK ILADWWAVLDPKEKQKYTDM AKEYKDAFMKANPGYRSGPS SG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	334
15N chemical shifts	68
1H chemical shifts	518

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HMG_box domain	1

Entities:

Entity 1, HMG_box domain 82 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ALA

ARG

2

PRO

MET

ASN

ALA

PHE

LEU

PHE

CYS

LYS

3

ARG

HIS

ARG

SER

LEU

VAL

ARG

GLN

GLU

HIS

4

PRO

ARG

LEU

ASP

ASN

ARG

GLY

ALA

THR

LYS

5

ILE

LEU

ALA

ASP

TRP

ALA

VAL

LEU

ASP

6

PRO

LYS

GLU

LYS

GLN

LYS

TYR

THR

ASP

MET

7

ALA

LYS

GLU

TYR

LYS

ASP

ALA

PHE

MET

LYS

8

ALA

ASN

PRO

GLY

TYR

ARG

SER

GLY

PRO

SER

9

SER

GLY

Samples:

sample_1: HMG_box domain, [U-13C; U-15N], 1.55 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.913, Kobayashi, N. - data analysis

CYANA v1.0.7, Guentert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WZ6
GB	ELK18141 ELV09777
REF	XP_006905507 XP_011383451 XP_011383519 XP_011383589 XP_011383651