BMRB Entry 10241

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PDB ID: 1x6b
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10241
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of the SH3 domain of human rho guanine exchange factor (GEF) 16

Deposition date:

2008-10-24

Original release date:

2009-11-03

Authors:

Sato, M.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Sato, M.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structures of the SH3 domain of human rho guanine exchange factor (GEF) 16" .

Assembly members:

Assembly members:
SH3 domain, polymer, 79 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040816-12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGWQGLSSKGDLPQV EITKAFFAKQADEVTLQQAD VVLVLQQEDGWLYGERLRDG ETGWFPEDFARFISGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	319
15N chemical shifts	77
1H chemical shifts	498

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 domain	1

Entities:

Entity 1, SH3 domain 79 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

TRP

GLN

GLY

2

LEU

SER

LYS

GLY

ASP

LEU

PRO

GLN

VAL

3

GLU

ILE

THR

LYS

ALA

PHE

ALA

LYS

GLN

4

ALA

ASP

GLU

VAL

THR

LEU

GLN

ALA

ASP

5

VAL

LEU

VAL

LEU

GLN

GLU

ASP

GLY

6

TRP

LEU

TYR

GLY

GLU

ARG

LEU

ARG

ASP

GLY

7

GLU

THR

GLY

TRP

PHE

PRO

GLU

ASP

PHE

ALA

8

ARG

PHE

ILE

SER

GLY

PRO

SER

GLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1X6B
DBJ	BAA13745 BAG53186 BAG58889
GB	AAH02681 AAH51838 AAP35934 AAP36764 AAX29017
REF	NP_055263 XP_004024598 XP_008968944 XP_009234043 XP_009445318
SP	Q5VV41
AlphaFold	Q5VV41