BMRB Entry 10193

Name: Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein
Published: 2009-02-27

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PDB ID: 2yum
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10193
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein

Deposition date:

2008-02-19

Original release date:

2009-02-27

Authors:

Abe, H.; Tochio, N.; Miyamoto, K.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Abe, H.; Tochio, N.; Miyamoto, K.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein" .

Assembly members:

Assembly members:
Myb-like DNA-binding domain, UNP residues 652-713, polymer, 75 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050613-19

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Myb-like DNA-binding domain, UNP residues 652-713: GSSGSSGNQLWTVEEQKKLE QLLIKYPPEEVESRRWQKIA DELGNRTAKQVASQVQKYFI KLTKAGIPVSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	303
15N chemical shifts	70
1H chemical shifts	497

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Myb-like DNA-binding domain, UNP residues 652-713	1

Entities:

Entity 1, Myb-like DNA-binding domain, UNP residues 652-713 75 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASN

GLN

LEU

2

TRP

THR

VAL

GLU

GLN

LYS

LEU

GLU

3

GLN

LEU

ILE

LYS

TYR

PRO

GLU

4

VAL

GLU

SER

ARG

TRP

GLN

LYS

ILE

ALA

5

ASP

GLU

LEU

GLY

ASN

ARG

THR

ALA

LYS

GLN

6

VAL

ALA

SER

GLN

VAL

GLN

LYS

TYR

PHE

ILE

7

LYS

LEU

THR

LYS

ALA

GLY

ILE

PRO

VAL

SER

8

GLY

PRO

SER

GLY

Samples:

sample_1: Myb-like DNA-binding domain, UNP residues 652-713, [U-13C; U-15N], 1.14 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F - processing

NMNMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9747, Kobayashi, N. - data analysis

CYANA v2.0.17, Guentert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2YUM
GB	AAH35079 ADZ15730 AIC62127