BMRB Entry 10150

Name: Solution structure of the SANT domain of fission yeast SPCC24B10.08c protein
Published: 2008-12-11

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PDB ID: 2elk
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10150
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the SANT domain of fission yeast SPCC24B10.08c protein

Deposition date:

2007-12-11

Original release date:

2008-12-11

Authors:

Tochio, N.; Koshiba, S.; Watanabe, S.; Harada, T.; Umehara, T.; Tanaka, A.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Watanabe, S.; Harada, T.; Umehara, T.; Tanaka, A.; Kigawa, T.; Yokoyama, S.. "Solution structure of the SANT domain of fission yeast SPCC24B10.08c protein" .

Assembly members:

Assembly members:
SPCC24B10.08c protein, polymer, 58 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Fission yeast Taxonomy ID: 4896 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Schizosaccharomyces pombe

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P060618-06

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SPCC24B10.08c protein: GSSGSSGFDENWGADEELLL IDACETLGLGNWADIADYVG NARTKEECRDHYLKTYIE

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	240
15N chemical shifts	61
1H chemical shifts	364

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SPCC24B10.08c protein	1

Entities:

Entity 1, SPCC24B10.08c protein 58 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PHE

ASP

GLU

2

ASN

TRP

GLY

ALA

ASP

GLU

LEU

3

ILE

ASP

ALA

CYS

GLU

THR

LEU

GLY

LEU

GLY

4

ASN

TRP

ALA

ASP

ILE

ALA

ASP

TYR

VAL

GLY

5

ASN

ALA

ARG

THR

LYS

GLU

CYS

ARG

ASP

6

HIS

TYR

LEU

LYS

THR

TYR

ILE

GLU

Samples:

sample_1: SANT domain, [U-13C; U-15N], 1.2 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

TOPSPIN v1.3, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution & refinement

NMR spectrometers:

Bruker AVANCE2 900 MHz

PDB	2ELK
EMBL	CAB76217
REF	NP_588011
SP	Q9P7J7
AlphaFold	Q9P7J7