BMRB Entry 10131

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PDB ID: 1v5p
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10131
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the N-terminal Pleckstrin Homology Domain Of TAPP2 from Mouse

Deposition date:

2007-04-02

Original release date:

2008-09-02

Authors:

Li, H.; Hayashi, F.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Li, H.; Hayashi, F.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the N-terminal Pleckstrin Homology Domain Of TAPP2 from Mouse" .

Assembly members:

Assembly members:
Pleckstrin Homology domain, polymer, 126 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030212-66

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Pleckstrin Homology domain: GSSGSSGMPYVDRQNRICGF LDIEDNENSGKFLRRYFILD TQANCLLWYMDNPQNLAVGA GAVGSLQLTYISKVSIATPK QKPKTPFCFVINALSQRYFL QANDQKDLKDWVEALNQASK SGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	537
15N chemical shifts	135
1H chemical shifts	847

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	pleckstrin homology domain-containing, family A	1

Entities:

Entity 1, pleckstrin homology domain-containing, family A 126 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

PRO

TYR

2

VAL

ASP

ARG

GLN

ASN

ARG

ILE

CYS

GLY

PHE

3

LEU

ASP

ILE

GLU

ASP

ASN

GLU

ASN

SER

GLY

4

LYS

PHE

LEU

ARG

TYR

PHE

ILE

LEU

ASP

5

THR

GLN

ALA

ASN

CYS

LEU

TRP

TYR

MET

6

ASP

ASN

PRO

GLN

ASN

LEU

ALA

VAL

GLY

ALA

7

GLY

ALA

VAL

GLY

SER

LEU

GLN

LEU

THR

TYR

8

ILE

SER

LYS

VAL

SER

ILE

ALA

THR

PRO

LYS

9

GLN

LYS

PRO

LYS

THR

PRO

PHE

CYS

PHE

VAL

10

ILE

ASN

ALA

LEU

SER

GLN

ARG

TYR

PHE

LEU

11

GLN

ALA

ASN

ASP

GLN

LYS

ASP

LEU

LYS

ASP

12

TRP

VAL

GLU

ALA

LEU

ASN

GLN

ALA

SER

LYS

13

SER

GLY

PRO

SER

GLY

Samples:

sample_1: Pleckstrin Homology domain, [U-13C; U-15N], 1.08 mM; PiNa 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1c, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.854, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 900 MHz

PDB	1V5P
DBJ	BAC37176 BAC40325
GB	AAG15198 AAH10215 AAL57436 EDL32841 EDL32843
REF	NP_112547 XP_001071937 XP_002720821 XP_003412568 XP_003751669
SP	Q9ERS5
AlphaFold	Q9ERS5