BMRB Entry 10130

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PDB ID: 1wf9
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10130
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a novel beta-grasp fold like domain of Hypothetical protein (Arabidopsis thaliana)

Deposition date:

2007-04-02

Original release date:

2008-09-02

Authors:

Qin, X.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Hayashi, F.; Yokoyama, S.. "Solution structure of a novel beta-grasp fold like domain of Hypothetical protein (Arabidopsis thaliana)" .

Assembly members:

Assembly members:
Hypothetical domain, polymer, 107 residues, Formula weight is not available

Natural source:

Natural source: Common Name: thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030212-84

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Hypothetical domain: GSSGSSGTMLRVRSRDGLER VSVDGPHITVSQLKTLIQDQ LQIPIHNQTLSTNRNLLLAK SPSDFLAFTDMADPNLRISS LNLAHGSMVYLAYEGERTIR GSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	457
15N chemical shifts	111
1H chemical shifts	737

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	NPL4 family protein	1

Entities:

Entity 1, NPL4 family protein 107 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

MET

LEU

2

ARG

VAL

ARG

SER

ARG

ASP

GLY

LEU

GLU

ARG

3

VAL

SER

VAL

ASP

GLY

PRO

HIS

ILE

THR

VAL

4

SER

GLN

LEU

LYS

THR

LEU

ILE

GLN

ASP

GLN

5

LEU

GLN

ILE

PRO

ILE

HIS

ASN

GLN

THR

LEU

6

SER

THR

ASN

ARG

ASN

LEU

ALA

LYS

7

SER

PRO

SER

ASP

PHE

LEU

ALA

PHE

THR

ASP

8

MET

ALA

ASP

PRO

ASN

LEU

ARG

ILE

SER

9

LEU

ASN

LEU

ALA

HIS

GLY

SER

MET

VAL

TYR

10

LEU

ALA

TYR

GLU

GLY

GLU

ARG

THR

ILE

ARG

11

GLY

SER

GLY

PRO

SER

GLY

Samples:

sample_1: Hypothetical domain, [U-13C; U-15], 1.07 mM; PiNa 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.854, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz

PDB	1WF9
EMBL	CAB87745
GB	AAK59569 AAL07248 ABG89129 AEE80422
REF	NP_191859
SP	Q9LYC2
AlphaFold	Q9LYC2