BMRB Entry 10128

Name: Solution structure of the second FNIII domain of DSCAML1 protein
Published: 2008-09-02

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PDB ID: 1va9
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10128
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the second FNIII domain of DSCAML1 protein

Deposition date:

2007-04-02

Original release date:

2008-09-02

Authors:

Qin, X.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Hayashi, F.; Yokoyama, S.. "Solution structure of the second FNIII domain of DSCAML1 protein" .

Assembly members:

Assembly members:
FNIII domain, polymer, 122 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030623-12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
FNIII domain: GSSGSSGISTEEAAPDGPPM DVTLQPVTSQSIQVTWKAPK KELQNGVIRGYQIGYRENSP GSNGQYSIVEMKATGDSEVY TLDNLKKFAQYGVVVQAFNR AGTGPSSSEINATTLESGPS SG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	503
15N chemical shifts	130
1H chemical shifts	799

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	second FNIII domain of DSCAML1 protein	1

Entities:

Entity 1, second FNIII domain of DSCAML1 protein 122 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ILE

SER

THR

2

GLU

ALA

PRO

ASP

GLY

PRO

MET

3

ASP

VAL

THR

LEU

GLN

PRO

VAL

THR

SER

GLN

4

SER

ILE

GLN

VAL

THR

TRP

LYS

ALA

PRO

LYS

5

LYS

GLU

LEU

GLN

ASN

GLY

VAL

ILE

ARG

GLY

6

TYR

GLN

ILE

GLY

TYR

ARG

GLU

ASN

SER

PRO

7

GLY

SER

ASN

GLY

GLN

TYR

SER

ILE

VAL

GLU

8

MET

LYS

ALA

THR

GLY

ASP

SER

GLU

VAL

TYR

9

THR

LEU

ASP

ASN

LEU

LYS

PHE

ALA

GLN

10

TYR

GLY

VAL

GLN

ALA

PHE

ASN

ARG

11

ALA

GLY

THR

GLY

PRO

SER

GLU

ILE

12

ASN

ALA

THR

LEU

GLU

SER

GLY

PRO

SER

13

SER

GLY

Samples:

sample_1: FNIII domain, [U-13C; U-15N], 1.05 mM; PiNa 20 mM; NaCl 100 mM; d10-DTT 1.0 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.854, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz

PDB	1VA9
GB	EDL25653
REF	XP_008567853 XP_009635232 XP_009915740 XP_010117466 XP_010180789