BMRB Entry 10122

Name: Solution structure of the second SH3 domain of human intersectin 2 (KIAA1256)
Published: 2008-09-02

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PDB ID: 1j3t
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10122
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the second SH3 domain of human intersectin 2 (KIAA1256)

Deposition date:

2007-04-02

Original release date:

2008-09-02

Authors:

Nameki, N.; Koshiba, S.; Tochio, N.; Kobayashi, N.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Nameki, N.; Koshiba, S.; Tochio, N.; Kobayashi, N.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the second SH3 domain of human intersectin 2 (KIAA1256)" .

Assembly members:

Assembly members:
SH3 domain, polymer, 74 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P021015-57

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGVENLKAQALCSWT AKKDNHLNFSKHDIITVLEQ QENWWFGEVHGGRGWFPKSY VKIIPGSESGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	313
15N chemical shifts	78
1H chemical shifts	482

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Intersectin 2	1

Entities:

Entity 1, Intersectin 2 74 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

VAL

GLU

ASN

2

LEU

LYS

ALA

GLN

ALA

LEU

CYS

SER

TRP

THR

3

ALA

LYS

ASP

ASN

HIS

LEU

ASN

PHE

SER

4

LYS

HIS

ASP

ILE

THR

VAL

LEU

GLU

GLN

5

GLN

GLU

ASN

TRP

PHE

GLY

GLU

VAL

HIS

6

GLY

ARG

GLY

TRP

PHE

PRO

LYS

SER

TYR

7

VAL

LYS

ILE

PRO

GLY

SER

GLU

SER

GLY

8

PRO

SER

GLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.5 mM; phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.771, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - structure solution

OPALp, Guntert, P. - refinement

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1J3T
REF	XP_007110328