BMRB Entry 10105

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PDB ID: 1v31
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10105
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g14170 from Arabidopsis thaliana

Deposition date:

2007-02-13

Original release date:

2008-08-15

Authors:

Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g14170 from Arabidopsis thaliana" .

Assembly members:

Assembly members:
SWIB/MDM2 domain, polymer, 93 residues, Formula weight is not available

Natural source:

Natural source: Common Name: thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030128-19

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SWIB/MDM2 domain: GSSGSSGVPEKFKLSTALMD VLGIEVETRPRIIAAIWHYV KARKLQNPNDPSFFNCDAAL QKVFGEEKLKFTMVSQKISH HLSPPPPSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	377
15N chemical shifts	79
1H chemical shifts	602

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	hypothetical protein RAFL11-05-P19	1

Entities:

Entity 1, hypothetical protein RAFL11-05-P19 93 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

VAL

PRO

GLU

2

LYS

PHE

LYS

LEU

SER

THR

ALA

LEU

MET

ASP

3

VAL

LEU

GLY

ILE

GLU

VAL

GLU

THR

ARG

PRO

4

ARG

ILE

ALA

ILE

TRP

HIS

TYR

VAL

5

LYS

ALA

ARG

LYS

LEU

GLN

ASN

PRO

ASN

ASP

6

PRO

SER

PHE

ASN

CYS

ASP

ALA

LEU

7

GLN

LYS

VAL

PHE

GLY

GLU

LYS

LEU

LYS

8

PHE

THR

MET

VAL

SER

GLN

LYS

ILE

SER

HIS

9

HIS

LEU

SER

PRO

SER

GLY

PRO

10

SER

GLY

Samples:

sample_1: SWIB/MDM2 domain, [U-13C; U-15N], 1 mM; phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delagio, F. - processing

NMRView v5.0.4, Jhonson, B.A. - data analysis

Kujira v0.815, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1V31
DBJ	BAB08296
GB	AAL38282 AAP68331 ADG39042 ADG39043 ADG39044
REF	NP_196921 XP_002873653 XP_006287459 XP_006287460 XP_006287461
SP	Q9FMT4
AlphaFold	Q9FMT4