BMRB Entry 10101

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PDB ID: 1ug7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10101
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of four helical up-and-down bundle domain of the hypothetical rotein 2610208M17Rik similar to the protein FLJ12806

Deposition date:

2007-02-13

Original release date:

2008-08-15

Authors:

Li, H.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Shirouzu, M.; Terada, M.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Arakawa, T.; Carninci, P.; Kawai, J.; Hayashizaki, Y.; Yokoyama, S.

Citation:

Citation: Li, H.; Kigawa, T.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Shirouzu, M.; Terada, M.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Arakawa, T.; Carninci, P.; Kawai, J.; Hayashizaki, Y.; Yokoyama, S.. "Solution structure of four helical up-and-down bundle domain of the hypothetical protein 2610208M17Rik similar to the protein FLJ12806" .

Assembly members:

Assembly members:
Four helical up-and-down bundle domain, polymer, 128 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P020918-18

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Four helical up-and-down bundle domain: GSSGSSGMSEVTRSLLQRWG ASLRRGADFDSWGQLVEAID EYQILARHLQKEAQAQHNNS EFTEEQKKTIGKIATCLELR SAALQSTQSQEEFKLEDLKK LEPILKNILTYNKEFPFDVQ PISGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	530
15N chemical shifts	126
1H chemical shifts	860

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	2610208M17Rik protein	1

Entities:

Entity 1, 2610208M17Rik protein 128 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

SER

GLU

2

VAL

THR

ARG

SER

LEU

GLN

ARG

TRP

GLY

3

ALA

SER

LEU

ARG

GLY

ALA

ASP

PHE

ASP

4

SER

TRP

GLY

GLN

LEU

VAL

GLU

ALA

ILE

ASP

5

GLU

TYR

GLN

ILE

LEU

ALA

ARG

HIS

LEU

GLN

6

LYS

GLU

ALA

GLN

ALA

GLN

HIS

ASN

SER

7

GLU

PHE

THR

GLU

GLN

LYS

THR

ILE

8

GLY

LYS

ILE

ALA

THR

CYS

LEU

GLU

LEU

ARG

9

SER

ALA

LEU

GLN

SER

THR

GLN

SER

GLN

10

GLU

PHE

LYS

LEU

GLU

ASP

LEU

LYS

11

LEU

GLU

PRO

ILE

LEU

LYS

ASN

ILE

LEU

THR

12

TYR

ASN

LYS

GLU

PHE

PRO

PHE

ASP

VAL

GLN

13

PRO

ILE

SER

GLY

PRO

SER

GLY

Samples:

sample_1: four helical up-and-down bundle domain, [U-13C; U-15N], 0.8 mM; d-Tris 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.811, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1UG7
DBJ	BAB14281 BAC38234 BAE00645 BAE25512 BAE29085
EMBL	CAH56257 CAH91107
GB	AAH15535 AAH57183 AAH66829 AAH67805 AAH86763
REF	NP_001121072 NP_001125646 NP_001192563 NP_001270111 NP_073742
SP	Q4R8C7 Q5RAV3 Q8C4Q6 Q96BJ3
TPG	DAA21418
AlphaFold	Q4R8C7 Q5RAV3 Q8C4Q6 Q96BJ3