BMRB Entry 10100

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PDB ID: 1uep
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10100
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of The Third PDZ Domain of Human Atrophin-1 Interacting Protein 1 (KIAA0705 Protein)

Deposition date:

2007-02-13

Original release date:

2008-08-15

Authors:

Miyamoto, K.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Miyamoto, K.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution Structure of The Third PDZ Domain of Human Atrophin-1 Interacting Protein 1 (KIAA0705 Protein)" .

Assembly members:

Assembly members:
PDZ Domain, polymer, 103 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P021030-30

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ Domain: GSSGSSGYKELDVHLRRMES GFGFRILGGDEPGQPILIGA VIAMGSADRDGRLHPGDELV YVDGIPVAGKTHRYVIDLMH HAARNGQVNLTVRRKVLSGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	401
15N chemical shifts	91
1H chemical shifts	660

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Membrane Associated Guanylate Kinase Inverted-2 (MAGI-2)	1

Entities:

Entity 1, Membrane Associated Guanylate Kinase Inverted-2 (MAGI-2) 103 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

TYR

LYS

GLU

2

LEU

ASP

VAL

HIS

LEU

ARG

MET

GLU

SER

3

GLY

PHE

GLY

PHE

ARG

ILE

LEU

GLY

ASP

4

GLU

PRO

GLY

GLN

PRO

ILE

LEU

ILE

GLY

ALA

5

VAL

ILE

ALA

MET

GLY

SER

ALA

ASP

ARG

ASP

6

GLY

ARG

LEU

HIS

PRO

GLY

ASP

GLU

LEU

VAL

7

TYR

VAL

ASP

GLY

ILE

PRO

VAL

ALA

GLY

LYS

8

THR

HIS

ARG

TYR

VAL

ILE

ASP

LEU

MET

HIS

9

HIS

ALA

ARG

ASN

GLY

GLN

VAL

ASN

LEU

10

THR

VAL

ARG

LYS

VAL

LEU

SER

GLY

PRO

11

SER

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.3 mM; Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.816, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - structure solution

OPALp, BILLETER, M., GUNTERT, P., KORADI, R. - refinement

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1UEP
GB	EGW09165 ELK01009 EMP32129 EPY80876 ERE90474