BMRB Entry 10094

Name: Solution structure of the third CUT domain of human Homeobox protein Cux-2
Published: 2008-08-14

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PDB ID: 1wh8
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10094
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the third CUT domain of human Homeobox protein Cux-2

Deposition date:

2007-01-24

Original release date:

2008-08-14

Authors:

Nameki, N.; Tochio, N.; Koshiba, S.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Nameki, N.; Tochio, N.; Koshiba, S.; Kigawa, T.; Yokoyama, S.. "Solution structure of the third CUT domain of human Homeobox protein Cux-2" .

Assembly members:

Assembly members:
CUT domain, polymer, 111 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040114-59

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CUT domain: GSSGSSGYSGSQAPGGIQEI VAMSPELDTYSITKRVKEVL TDNNLGQRLFGESILGLTQG SVSDLLSRPKPWHKLSLKGR EPFVRMQLWLNDPHNVEKLR DMKKLSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	462
15N chemical shifts	103
1H chemical shifts	734

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Homeobox protein Cux-2	1

Entities:

Entity 1, Homeobox protein Cux-2 111 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

TYR

SER

GLY

2

SER

GLN

ALA

PRO

GLY

ILE

GLN

GLU

ILE

3

VAL

ALA

MET

SER

PRO

GLU

LEU

ASP

THR

TYR

4

SER

ILE

THR

LYS

ARG

VAL

LYS

GLU

VAL

LEU

5

THR

ASP

ASN

LEU

GLY

GLN

ARG

LEU

PHE

6

GLY

GLU

SER

ILE

LEU

GLY

LEU

THR

GLN

GLY

7

SER

VAL

SER

ASP

LEU

SER

ARG

PRO

LYS

8

PRO

TRP

HIS

LYS

LEU

SER

LEU

LYS

GLY

ARG

9

GLU

PRO

PHE

VAL

ARG

MET

GLN

LEU

TRP

LEU

10

ASN

ASP

PRO

HIS

ASN

VAL

GLU

LYS

LEU

ARG

11

ASP

MET

LYS

LEU

SER

GLY

PRO

SER

12

GLY

Samples:

sample_1: CUT domain, [U-13C; U-15N], 1.1 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.901, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - structure solution

OPALp, Billeter, M., Guntert, P., Koradi, R. - refinement

NMR spectrometers:

Bruker AVANCE 700 MHz

PDB	1WH8
REF	XP_002823799 XP_006109587 XP_009684359 XP_011887772