BMRB Entry 10087

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PDB ID: 1wh3
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10087
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL)

Deposition date:

2007-01-24

Original release date:

2008-08-14

Authors:

Tochio, N.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL)" .

Assembly members:

Assembly members:
ubiquitin like domain, polymer, 87 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040301-13

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ubiquitin like domain: GSSGSSGIQVFVKNPDGGSY AYAINPNSFILGLKQQIEDQ QGLPKKQQQLEFQGQVLQDW LGLGIYGIQDSDTLILSKKK GSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	348
15N chemical shifts	87
1H chemical shifts	550

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	59 kDa 2'-5'-oligoadenylate synthetase like protein	1

Entities:

Entity 1, 59 kDa 2'-5'-oligoadenylate synthetase like protein 87 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ILE

GLN

VAL

2

PHE

VAL

LYS

ASN

PRO

ASP

GLY

SER

TYR

3

ALA

TYR

ALA

ILE

ASN

PRO

ASN

SER

PHE

ILE

4

LEU

GLY

LEU

LYS

GLN

ILE

GLU

ASP

GLN

5

GLN

GLY

LEU

PRO

LYS

GLN

LEU

6

GLU

PHE

GLN

GLY

GLN

VAL

LEU

GLN

ASP

TRP

7

LEU

GLY

LEU

GLY

ILE

TYR

GLY

ILE

GLN

ASP

8

SER

ASP

THR

LEU

ILE

LEU

SER

LYS

9

GLY

SER

GLY

PRO

SER

GLY

Samples:

sample_1: ubiquitin like domain, [U-13C; U-15N], 1.1 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.5; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.8994, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WH3
DBJ	BAK62869
REF	NP_001267398 XP_003907322 XP_004054078 XP_004054079