BMRB Entry 10085

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PDB ID: 1wg5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10085
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the first RRM domain in heterogeneous nuclear ribonucleoprotein H

Deposition date:

2007-01-24

Original release date:

2008-08-14

Authors:

He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.

Citation:

Citation: He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.. "Solution structure of the first RRM domain in heterogeneous nuclear ribonucleoprotein H" .

Assembly members:

Assembly members:
RRM domain, polymer, 104 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: p040223-24

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RRM domain: GSSGSSGNSPDTANDGFVRL RGLPFGCSKEEIVQFFSGLE IVPNGMTLPVDFQGRSTGEA FVQFASQEIAEKALKKHKER IGHRYIEIFKSSRAEVRTSG PSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	427
15N chemical shifts	96
1H chemical shifts	662

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Heterogeneous nuclear ribonucleoprotein H	1

Entities:

Entity 1, Heterogeneous nuclear ribonucleoprotein H 104 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASN

SER

PRO

2

ASP

THR

ALA

ASN

ASP

GLY

PHE

VAL

ARG

LEU

3

ARG

GLY

LEU

PRO

PHE

GLY

CYS

SER

LYS

GLU

4

GLU

ILE

VAL

GLN

PHE

SER

GLY

LEU

GLU

5

ILE

VAL

PRO

ASN

GLY

MET

THR

LEU

PRO

VAL

6

ASP

PHE

GLN

GLY

ARG

SER

THR

GLY

GLU

ALA

7

PHE

VAL

GLN

PHE

ALA

SER

GLN

GLU

ILE

ALA

8

GLU

LYS

ALA

LEU

LYS

HIS

LYS

GLU

ARG

9

ILE

GLY

HIS

ARG

TYR

ILE

GLU

ILE

PHE

LYS

10

SER

ARG

ALA

GLU

VAL

ARG

THR

SER

GLY

11

PRO

SER

GLY

Samples:

sample_1: RRM domain, [U-13C; U-15N], 0.8 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.863, Kobayashi, N. - data analysis

CYANA v2.0.29, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 700 MHz