BMRB Entry 10074

Name: The first C2 domain of human synaptotagmin XIII
Published: 2008-08-14

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PDB ID: 1wfm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10074
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The first C2 domain of human synaptotagmin XIII

Deposition date:

2006-12-25

Original release date:

2008-08-14

Authors:

Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Nagashima, T.; Hayashi, F.; Yokoyama, S.. "The first C2 domain of human synaptotagmin XIII" .

Assembly members:

Assembly members:
C2 domain, polymer, 138 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040113-87

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C2 domain: GSSGSSGSWNQAPKLHYCLD YDCQKAELFVTRLEAVTSNH DGGCDCYVQGSVANRTGSVE AQTALKKRQLHTTWEEGLVL PLAEEELPTATLTLTLRTCD RFSRHSVAGELRLGLDGTSV PLGAAQWGELKTSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	549
15N chemical shifts	126
1H chemical shifts	861

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	synaptotagmin XIII	1

Entities:

Entity 1, synaptotagmin XIII 138 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

SER

TRP

ASN

2

GLN

ALA

PRO

LYS

LEU

HIS

TYR

CYS

LEU

ASP

3

TYR

ASP

CYS

GLN

LYS

ALA

GLU

LEU

PHE

VAL

4

THR

ARG

LEU

GLU

ALA

VAL

THR

SER

ASN

HIS

5

ASP

GLY

CYS

ASP

CYS

TYR

VAL

GLN

GLY

6

SER

VAL

ALA

ASN

ARG

THR

GLY

SER

VAL

GLU

7

ALA

GLN

THR

ALA

LEU

LYS

ARG

GLN

LEU

8

HIS

THR

TRP

GLU

GLY

LEU

VAL

LEU

9

PRO

LEU

ALA

GLU

LEU

PRO

THR

ALA

10

THR

LEU

THR

LEU

THR

LEU

ARG

THR

CYS

ASP

11

ARG

PHE

SER

ARG

HIS

SER

VAL

ALA

GLY

GLU

12

LEU

ARG

LEU

GLY

LEU

ASP

GLY

THR

SER

VAL

13

PRO

LEU

GLY

ALA

GLN

TRP

GLY

GLU

LEU

14

LYS

THR

SER

GLY

PRO

SER

GLY

Samples:

sample_1: C2 domain, [U-13C; U-15N], 1.07 mM; d-TRIS 20 mM; NaCl 100 mM; d-DTT 5 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.8992, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - processing, refinement

NMR spectrometers:

Varian INOVA 900 MHz