BMRB Entry 10073

Name: C2 domain-containing protein from putative elicitor-responsive gene
Published: 2008-08-14

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PDB ID: 1wfj
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10073
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

C2 domain-containing protein from putative elicitor-responsive gene

Deposition date:

2006-12-25

Original release date:

2008-08-14

Authors:

Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Nagashima, T.; Hayashi, F.; Yokoyama, S.. "C2 domain-containing protein from putative elicitor-responsive gene" .

Assembly members:

Assembly members:
C2 domain, polymer, 136 residues, Formula weight is not available

Natural source:

Natural source: Common Name: thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P031104-14

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C2 domain: GSSGSSGPHGTLEVVLVSAK GLEDADFLNNMDPYVQLTCR TQDQKSNVAEGMGTTPEWNE TFIFTVSEGTTELKAKIFDK DVGTEDDAVGEATIPLEPVF VEGSIPPTAYNVVKDEEYKG EIWVALSFKPSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	581
15N chemical shifts	134
1H chemical shifts	902

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	putative elicitor-responsive gene	1

Entities:

Entity 1, putative elicitor-responsive gene 136 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

HIS

GLY

2

THR

LEU

GLU

VAL

LEU

VAL

SER

ALA

LYS

3

GLY

LEU

GLU

ASP

ALA

ASP

PHE

LEU

ASN

4

MET

ASP

PRO

TYR

VAL

GLN

LEU

THR

CYS

ARG

5

THR

GLN

ASP

GLN

LYS

SER

ASN

VAL

ALA

GLU

6

GLY

MET

GLY

THR

PRO

GLU

TRP

ASN

GLU

7

THR

PHE

ILE

PHE

THR

VAL

SER

GLU

GLY

THR

8

THR

GLU

LEU

LYS

ALA

LYS

ILE

PHE

ASP

LYS

9

ASP

VAL

GLY

THR

GLU

ASP

ALA

VAL

GLY

10

GLU

ALA

THR

ILE

PRO

LEU

GLU

PRO

VAL

PHE

11

VAL

GLU

GLY

SER

ILE

PRO

THR

ALA

TYR

12

ASN

VAL

LYS

ASP

GLU

TYR

LYS

GLY

13

GLU

ILE

TRP

VAL

ALA

LEU

SER

PHE

LYS

PRO

14

SER

GLY

PRO

SER

GLY

Samples:

sample_1: C2 domain, [U-13C; U-15N], 1.19 mM; NaPi 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.8992, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 900 MHz
Varian INOVA 800 MHz

PDB	1WFJ
GB	AAG52148 AAK96814 AAM10066 AAM63058 AEE34071
REF	NP_176511 XP_002887967
SP	Q9C8S6
AlphaFold	Q9C8S6