BMRB Entry 10072

Name: Solution structure of RRM domain in HNRPC protein
Published: 2008-08-14

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PDB ID: 1wf2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10072
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of RRM domain in HNRPC protein

Deposition date:

2006-12-25

Original release date:

2008-08-14

Authors:

He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.

Citation:

Citation: He, F.; Muto, Y.; Inoue, M.; Kigawa, T.; Shirouzu, M.; Terada, T.; Yokoyama, S.. "Solution structure of RRM domain in HNRPC protein" .

Assembly members:

Assembly members:
RRM domain, polymer, 98 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040301-06

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RRM domain: GSSGSSGKTDPRSMNSRVFI GNLNTLVVKKSDVEAIFSKY GKIVGCSVHKGFAFVQYVNE RNARAAVAGEDGRMIAGQVL DINLAAEPKVNRSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	376
15N chemical shifts	89
1H chemical shifts	605

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Heterogeneous nuclear ribonucleoproteins C1/C2	1

Entities:

Entity 1, Heterogeneous nuclear ribonucleoproteins C1/C2 98 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

LYS

THR

ASP

2

PRO

ARG

SER

MET

ASN

SER

ARG

VAL

PHE

ILE

3

GLY

ASN

LEU

ASN

THR

LEU

VAL

LYS

4

SER

ASP

VAL

GLU

ALA

ILE

PHE

SER

LYS

TYR

5

GLY

LYS

ILE

VAL

GLY

CYS

SER

VAL

HIS

LYS

6

GLY

PHE

ALA

PHE

VAL

GLN

TYR

VAL

ASN

GLU

7

ARG

ASN

ALA

ARG

ALA

VAL

ALA

GLY

GLU

8

ASP

GLY

ARG

MET

ILE

ALA

GLY

GLN

VAL

LEU

9

ASP

ILE

ASN

LEU

ALA

GLU

PRO

LYS

VAL

10

ASN

ARG

SER

GLY

PRO

SER

GLY

Samples:

sample_1: RRM domain, [U-13C; U-15N], 0.8 mM; d-Tris-HCl(pH 7.0) 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.863, Kobayashi, N. - data analysis

CYANA v2.0.29, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WF2
GB	AAV66399 EDL42257 EDL42258
REF	XP_005372243 XP_009989486 XP_012325381 XP_013226683