BMRB Entry 10066

Name: Solution structure of the third PDZ domain of human KIAA1526 protein
Published: 2008-08-14

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PDB ID: 1ufx
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10066
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the third PDZ domain of human KIAA1526 protein

Deposition date:

2006-12-25

Original release date:

2008-08-14

Authors:

Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Ohara, O.; Nagase, T.; Kikuno, R.; Nakayama, M.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Kobayashi, N.; Koshiba, S.; Kigawa, T.; Inoue, M.; Shirouzu, M.; Terada, T.; Yabuki, T.; Aoki, M.; Seki, E.; Matsuda, T.; Hirota, H.; Yoshida, M.; Tanaka, A.; Osanai, T.; Matsuo, Y.; Ohara, O.; Nagase, T.; Kikuno, R.; Nakayama, M.; Yokoyama, S.. "Solution structure of the third PDZ domain of human KIAA1526 protein" .

Assembly members:

Assembly members:
PDZ domain, polymer, 103 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P021030-48

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGTLVRVKKSAATLG IAIEGGANTRQPLPRIVTIQ RGGSAHNCGQLKVGHVILEV NGLTLRGKEHREAARIIAEA FKTKDRDYIDFLVTEFNSGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	406
15N chemical shifts	88
1H chemical shifts	660

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	KIAA1526 protein	1

Entities:

Entity 1, KIAA1526 protein 103 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

LEU

VAL

2

ARG

VAL

LYS

SER

ALA

THR

LEU

GLY

3

ILE

ALA

ILE

GLU

GLY

ALA

ASN

THR

ARG

4

GLN

PRO

LEU

PRO

ARG

ILE

VAL

THR

ILE

GLN

5

ARG

GLY

SER

ALA

HIS

ASN

CYS

GLY

GLN

6

LEU

LYS

VAL

GLY

HIS

VAL

ILE

LEU

GLU

VAL

7

ASN

GLY

LEU

THR

LEU

ARG

GLY

LYS

GLU

HIS

8

ARG

GLU

ALA

ARG

ILE

ALA

GLU

ALA

9

PHE

LYS

THR

LYS

ASP

ARG

ASP

TYR

ILE

ASP

10

PHE

LEU

VAL

THR

GLU

PHE

ASN

SER

GLY

PRO

11

SER

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.2 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v200204025, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.816, Kobayashi, N. - data analysis

CYANA v2.0.14, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1UFX
DBJ	BAA96050 BAB14275 BAI45560
EMBL	CAB53685
GB	AAI36417 AAI42615 AAI42685 EAW87420 EAW87421
REF	NP_001077354 NP_001166896 NP_056219 XP_001096493 XP_003911373
SP	Q9P202
AlphaFold	Q9P202