BMRB Entry 10064

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PDB ID: 1uew
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10064
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of The forth PDZ Domain of Human Atrophin-1 Interacting Protein 1 (KIAA0705 Protein)

Deposition date:

2006-12-25

Original release date:

2008-08-14

Authors:

Tomizawa, T.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Tomizawa, T.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution Structure of The forth PDZ Domain of Human Atrophin-1 Interacting Protein 1 (KIAA0705 Protein)" .

Assembly members:

Assembly members:
PDZ Domain, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P021030-32

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ Domain: GSSGSSGSLQTSDVVIHRKE NEGFGFVIISSLNRPESGST ITVPHKIGRIIDGSPADRCA KLKVGDRILAVNGQSIINMP HADIVKLIKDAGLSVTLRII PQEELNSPSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	467
15N chemical shifts	109
1H chemical shifts	759

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	MEMBRANE ASSOCIATED GUANYLATE KINASE INVERTED-2 (MAGI-2)	1

Entities:

Entity 1, MEMBRANE ASSOCIATED GUANYLATE KINASE INVERTED-2 (MAGI-2) 114 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

SER

LEU

GLN

2

THR

SER

ASP

VAL

ILE

HIS

ARG

LYS

GLU

3

ASN

GLU

GLY

PHE

GLY

PHE

VAL

ILE

SER

4

SER

LEU

ASN

ARG

PRO

GLU

SER

GLY

SER

THR

5

ILE

THR

VAL

PRO

HIS

LYS

ILE

GLY

ARG

ILE

6

ILE

ASP

GLY

SER

PRO

ALA

ASP

ARG

CYS

ALA

7

LYS

LEU

LYS

VAL

GLY

ASP

ARG

ILE

LEU

ALA

8

VAL

ASN

GLY

GLN

SER

ILE

ASN

MET

PRO

9

HIS

ALA

ASP

ILE

VAL

LYS

LEU

ILE

LYS

ASP

10

ALA

GLY

LEU

SER

VAL

THR

LEU

ARG

ILE

11

PRO

GLN

GLU

LEU

ASN

SER

PRO

SER

GLY

12

PRO

SER

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.4 mM; Tris-HCl(7.0) 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.820, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - structure solution

OPALp, Billeter, M., Guntert, P., Koradi, R. - refinement

NMR spectrometers:

Bruker AVANCE 800 MHz