BMRB Entry 10049

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PDB ID: 1wjt
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10049
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the N-terminal Domain I of mouse transcription elongation factor S-II protein 3

Deposition date:

2006-11-09

Original release date:

2008-08-13

Authors:

Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the N-terminal Domain I of mouse transcription elongation factor S-II protein 3" .

Assembly members:

Assembly members:
Domain I, polymer, 103 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030916-23

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Domain I: GSSGSSGMGLEEELLRIAKK LEKMVSRKKTEGALDLLKKL NSCQMSIQLLQTTRIGVAVN GVRKHCSDKEVVSLAKVLIK NWKRLLDSPRTTKGERESGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	433
15N chemical shifts	100
1H chemical shifts	715

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Transcription elongation factor S-II protein 3	1

Entities:

Entity 1, Transcription elongation factor S-II protein 3 103 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

GLY

LEU

2

GLU

LEU

ARG

ILE

ALA

LYS

3

LEU

GLU

LYS

MET

VAL

SER

ARG

LYS

THR

4

GLU

GLY

ALA

LEU

ASP

LEU

LYS

LEU

5

ASN

SER

CYS

GLN

MET

SER

ILE

GLN

LEU

6

GLN

THR

ARG

ILE

GLY

VAL

ALA

VAL

ASN

7

GLY

VAL

ARG

LYS

HIS

CYS

SER

ASP

LYS

GLU

8

VAL

SER

LEU

ALA

LYS

VAL

LEU

ILE

LYS

9

ASN

TRP

LYS

ARG

LEU

ASP

SER

PRO

ARG

10

THR

LYS

GLY

GLU

ARG

GLU

SER

GLY

PRO

11

SER

GLY

Samples:

sample_1: Domain I of TFIIS, [U-13C; U-15N], 1 mM; d-Tris-HCl 20 mM; NaCl 200 mM; d-DTT 2 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 220 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delagio, F. - processing

NMRView v5.0.4, Jhonson, B.A. - data analysis

Kujira v0.896, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WJT
DBJ	BAB25037 BAF80886
EMBL	CAA11392
GB	AAH10807 AAH91180 EDL29944 EDL80805 EPY82437
REF	NP_001015008 NP_035672 XP_003504976 XP_007617250
SP	P23881
AlphaFold	P23881