BMRB Entry 10048

Name: Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3
Published: 2008-08-13

Click here to enlarge.

PDB ID: 1wji
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10048
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3

Deposition date:

2006-11-09

Original release date:

2008-08-13

Authors:

Kamatari, Y.; Tochio, N.; Nakanishi, T.; Miyamoto, K.; Li, H.; Kobayashi, N.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Kamatari, Y.; Tochio, N.; Nakanishi, T.; Miyamoto, K.; Li, H.; Kobayashi, N.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3" .

Assembly members:

Assembly members:
UBA domain, polymer, 63 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040301-26

Entity Sequences (FASTA):

Entity Sequences (FASTA):
UBA domain: GSSGSSGVDEKALKHITEMG FSKEASRQALMDNGNNLEAA LNVLLTSNKQKPVMGPPSGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	237
15N chemical shifts	59
1H chemical shifts	379

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Tudor domain containing protein 3	1

Entities:

Entity 1, Tudor domain containing protein 3 63 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

VAL

ASP

GLU

2

LYS

ALA

LEU

LYS

HIS

ILE

THR

GLU

MET

GLY

3

PHE

SER

LYS

GLU

ALA

SER

ARG

GLN

ALA

LEU

4

MET

ASP

ASN

GLY

ASN

LEU

GLU

ALA

5

LEU

ASN

VAL

LEU

THR

SER

ASN

LYS

GLN

6

LYS

PRO

VAL

MET

GLY

PRO

SER

GLY

PRO

7

SER

GLY

Samples:

sample_1: UBA domain, [U-13C; U-15N], 1.04 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.8998, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WJI
DBJ	BAB14950 BAJ17879 BAK63800
EMBL	CAD97894 CAL37786
GB	AAH30514 AAH60876 ACC94142 AIC52422 EAW52079
REF	NP_001139542 NP_001139543 NP_110421 XP_002808194 XP_003257452
SP	Q9H7E2
AlphaFold	Q9H7E2