BMRB Entry 10047

Click here to enlarge.

PDB ID: 2ecc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10047
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution Structure of the Homeobox Domain of Human Homeodomain Leucine Zipper-Encoding Gene (Homez)

Deposition date:

2006-11-09

Original release date:

2008-08-13

Authors:

Kamatari, Y.; Tochio, N.; Nameki, N.; Miyamoto, K.; Li, H.; Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Kamatari, Y.; Tochio, N.; Nameki, N.; Miyamoto, K.; Li, H.; Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the Homeobox Domain of Human Homeodomain Leucine Zipper-Encoding Gene (Homez)" .

Assembly members:

Assembly members:
homeobox domain, polymer, 76 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P040126-87

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGKRKTKEQLAILKS FFLQCQWARREDYQKLEQIT GLPRPEIIQWFGDTRYALKH GQLKWFRDNASGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	330
15N chemical shifts	73
1H chemical shifts	513

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Homeobox leucine zipper protein Homez	1

Entities:

Entity 1, Homeobox leucine zipper protein Homez 76 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

LYS

ARG

LYS

2

THR

LYS

GLU

GLN

LEU

ALA

ILE

LEU

LYS

SER

3

PHE

LEU

GLN

CYS

GLN

TRP

ALA

ARG

4

GLU

ASP

TYR

GLN

LYS

LEU

GLU

GLN

ILE

THR

5

GLY

LEU

PRO

ARG

PRO

GLU

ILE

GLN

TRP

6

PHE

GLY

ASP

THR

ARG

TYR

ALA

LEU

LYS

HIS

7

GLY

GLN

LEU

LYS

TRP

PHE

ARG

ASP

ASN

ALA

8

SER

GLY

PRO

SER

GLY

Samples:

sample_1: homeobox domain, [U-13C; U-15N], 1.14 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.8998, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2ECC
DBJ	BAA92681 BAC98171 BAG10069 BAG59479 BAG63292
GB	AAH84701 AAH85694 AAH94669 AAI30393 AAM94347
REF	NP_001171176 NP_065885 NP_690062 NP_898997 XP_001102279
SP	Q80W88 Q8IX15 Q8K3E9
TPG	DAA25845
AlphaFold	Q80W88 Q8IX15 Q8K3E9