BMRB Entry 10045

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10045
MolProbity Validation Chart

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Title:
Solution structure of homeobox domain of Arabidopsis thaliana hypothetical protein F22K18.140
Deposition date:
2006-11-09
Original release date:
2008-08-13
Authors:
Kaneno, D.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Kaneno, D.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of homeobox domain of Arabidopsis thaliana hypothetical protein F22K18.140"  .

Assembly members:

Assembly members:
homeobox domain, polymer, 80 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: thale cress   Taxonomy ID: 3702   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source:   Production method: cell free synthesis   Vector: P030107-41

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGSNPSSSGGTTKRF RTKFTAEQKEKMLAFAERLG WRIQKHDDVAVEQFCAETGV RRQVLKIWMHNNKNSGPSSG

Data sets:
Data typeCount
13C chemical shifts326
15N chemical shifts82
1H chemical shifts510

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1ZF-HD homeobox family protein1

Entities:

Entity 1, ZF-HD homeobox family protein 80 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYSERASNPRO
2   SERSERSERGLYGLYTHRTHRLYSARGPHE
3   ARGTHRLYSPHETHRALAGLUGLNLYSGLU
4   LYSMETLEUALAPHEALAGLUARGLEUGLY
5   TRPARGILEGLNLYSHISASPASPVALALA
6   VALGLUGLNPHECYSALAGLUTHRGLYVAL
7   ARGARGGLNVALLEULYSILETRPMETHIS
8   ASNASNLYSASNSERGLYPROSERSERGLY

Samples:

sample_1: homeobox domain, [U-13C; U-15N], 0.9 mM; phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1not availablecondition_1
3D 15N-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.811, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAJ34347
EMBL CAA22997 CAB79376
GB AAL27510 AAM78073 AEE84939 EFH43913 EOA19177
REF NP_194197 XP_002867654 XP_006286279 XP_006413402 XP_010433740
SP Q9SB61
AlphaFold Q9SB61

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks