BMRB Entry 10044

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PDB ID: 1wh5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10044
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of homeobox domain of Arabidopsisthaliana zinc finger homeobox family protein

Deposition date:

2006-11-09

Original release date:

2008-08-13

Authors:

Kaneno, D.; Tochio, N.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Kaneno, D.; Tochio, N.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of homeobox domain of Arabidopsisthaliana zinc finger homeobox family protein" .

Assembly members:

Assembly members:
homeobox domain, polymer, 80 residues, Formula weight is not available

Natural source:

Natural source: Common Name: thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P030107-56

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGSSAEAGGGIRKRH RTKFTAEQKERMLALAERIG WRIQRQDDEVIQRFCQETGV PRQVLKVWLHNNKHSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	308
15N chemical shifts	78
1H chemical shifts	498

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ZF-HD homeobox family protein	1

Entities:

Entity 1, ZF-HD homeobox family protein 80 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	SER	ALA
2	GLU	ALA	GLY	GLY	GLY	ILE	ARG	LYS	ARG	HIS
3	ARG	THR	LYS	PHE	THR	ALA	GLU	GLN	LYS	GLU
4	ARG	MET	LEU	ALA	LEU	ALA	GLU	ARG	ILE	GLY
5	TRP	ARG	ILE	GLN	ARG	GLN	ASP	ASP	GLU	VAL
6	ILE	GLN	ARG	PHE	CYS	GLN	GLU	THR	GLY	VAL
7	PRO	ARG	GLN	VAL	LEU	LYS	VAL	TRP	LEU	HIS
8	ASN	ASN	LYS	HIS	SER	GLY	PRO	SER	SER	GLY

Samples:

sample_1: homeobox domain, [U-15N, U-13C], 1.1 mM; phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D_13C-separated_NOESY	sample_1	not available	condition_1
3D_15N-separated_NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.811, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WH5
DBJ	BAB11563
GB	AAO00745 AAP13412 AED98048
REF	NP_201344
SP	Q9FKP8
AlphaFold	Q9FKP8

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	SER	ALA
2	GLU	ALA	GLY	GLY	GLY	ILE	ARG	LYS	ARG	HIS
3	ARG	THR	LYS	PHE	THR	ALA	GLU	GLN	LYS	GLU
4	ARG	MET	LEU	ALA	LEU	ALA	GLU	ARG	ILE	GLY
5	TRP	ARG	ILE	GLN	ARG	GLN	ASP	ASP	GLU	VAL
6	ILE	GLN	ARG	PHE	CYS	GLN	GLU	THR	GLY	VAL
7	PRO	ARG	GLN	VAL	LEU	LYS	VAL	TRP	LEU	HIS
8	ASN	ASN	LYS	HIS	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	SER	SER	ALA
2	GLU	ALA	GLY	GLY	GLY	ILE	ARG	LYS	ARG	HIS
3	ARG	THR	LYS	PHE	THR	ALA	GLU	GLN	LYS	GLU
4	ARG	MET	LEU	ALA	LEU	ALA	GLU	ARG	ILE	GLY
5	TRP	ARG	ILE	GLN	ARG	GLN	ASP	ASP	GLU	VAL
6	ILE	GLN	ARG	PHE	CYS	GLN	GLU	THR	GLY	VAL
7	PRO	ARG	GLN	VAL	LEU	LYS	VAL	TRP	LEU	HIS
8	ASN	ASN	LYS	HIS	SER	GLY	PRO	SER	SER	GLY