BMRB Entry 10036

Name: Solution structure of mouse CGI-38 protein
Published: 2008-08-13

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PDB ID: 1wlm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10036
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of mouse CGI-38 protein

Deposition date:

2006-11-01

Original release date:

2008-08-13

Authors:

Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Kobayashi, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of mouse CGI-38 protein" .

Assembly members:

Assembly members:
Protein CGI-38, polymer, 151 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P020902-43

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Protein CGI-38: GSSGSSGMAASTDIAGLEES FRKFAIHGDPKASGQEMNGK NWAKLCKDCKVADGKAVTGT DVDIVFSKVKAKSARVINYE EFKKALEELATKRFKGKSKE EAFDAICQLIAGKEPANIGV TKAKTGGAVDRLTDTSKYTG SHKERSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	629
15N chemical shifts	154
1H chemical shifts	983

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Protein CGI-38	1

Entities:

Entity 1, Protein CGI-38 151 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

ALA

2

SER

THR

ASP

ILE

ALA

GLY

LEU

GLU

SER

3

PHE

ARG

LYS

PHE

ALA

ILE

HIS

GLY

ASP

PRO

4

LYS

ALA

SER

GLY

GLN

GLU

MET

ASN

GLY

LYS

5

ASN

TRP

ALA

LYS

LEU

CYS

LYS

ASP

CYS

LYS

6

VAL

ALA

ASP

GLY

LYS

ALA

VAL

THR

GLY

THR

7

ASP

VAL

ASP

ILE

VAL

PHE

SER

LYS

VAL

LYS

8

ALA

LYS

SER

ALA

ARG

VAL

ILE

ASN

TYR

GLU

9

GLU

PHE

LYS

ALA

LEU

GLU

LEU

ALA

10

THR

LYS

ARG

PHE

LYS

GLY

LYS

SER

LYS

GLU

11

GLU

ALA

PHE

ASP

ALA

ILE

CYS

GLN

LEU

ILE

12

ALA

GLY

LYS

GLU

PRO

ALA

ASN

ILE

GLY

VAL

13

THR

LYS

ALA

LYS

THR

GLY

ALA

VAL

ASP

14

ARG

LEU

THR

ASP

THR

SER

LYS

TYR

THR

GLY

15

SER

HIS

LYS

GLU

ARG

SER

GLY

PRO

SER

16

GLY

Samples:

sample_1: CGI-38, [U-13C; U-15N], 1.23 mM; Phosphate 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	not available	condition_1
3D 13C-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.902, Kobayashi, N. - data analysis

CYANA v1.0.7, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WLM
DBJ	BAB26493 BAB28237 BAE32991 BAE35831
GB	AAH10788 AAH87585 EDL11282 EDL92377 EGV97042
REF	NP_001009639 NP_001181772 NP_080757 XP_002802578 XP_003262934
SP	Q5PPN5 Q9CRB6
AlphaFold	Q5PPN5 Q9CRB6