BMRB Entry 10018

Name: 1H Chemical Shift Assignments for LINE RNA
Published: 2006-11-21

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PDB ID: 2fdt
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR10018
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H Chemical Shift Assignments for LINE RNA

Deposition date:

2005-12-14

Original release date:

2006-11-21

Authors:

Nomura, Yusuke; Baba, Seiki; Nakazato, Shinta; Sakamoto, Taiichi; Kajikawa, Masaki; Okada, Norihiro; Kawai, Gota

Citation:

Citation: Nomura, Yusuke; Kajikawa, Masaki; Baba, Seiki; Nakazato, Shinta; Imai, T.; Sakamoto, Taiichi; Okada, Norihiro; Kawai, Gota. "Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2" Nucleic Acids Res. 34, 5184-5193 (2006).
PubMed: 17000640

Assembly members:

Assembly members:
LINE36, polymer, 36 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Japanese eel Taxonomy ID: 7937 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Anguilla Japonica

Experimental source:

Experimental source: Production method: enzymatic synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
LINE36: GGUUGUACGUCGCUUUGGAU AAAAGCGUCUGCGACC

Data sets:

assigned_chemical_shifts
- L36

Data type	Count
1H chemical shifts	178

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RNA hairpin of eel LINE	1

Entities:

Entity 1, RNA hairpin of eel LINE 36 residues - Formula weight is not available

1

G

U

G

U

A

C

G

U

2

C

G

C

U

G

A

U

3

A

G

C

G

U

C

U

4

G

C

G

A

C

Samples:

sample_1: LINE36 1.0 ± 0.1 mM

condition_1: pH: 6.0; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	not available	condition_1
2D TOCSY	sample_1	not available	condition_1
DQF-COSY	sample_1	not available	condition_1
HP-COSY	sample_1	not available	condition_1
HCP	sample_1	not available	condition_1
HALF FILTERED NOESY	sample_1	not available	condition_1
2D HNN-COSY	sample_1	not available	condition_1
2D HSQC	sample_1	not available	condition_1
2D TROSY	sample_1	not available	condition_1

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz
Bruker DRX 500 MHz