BMRB Entry 10008

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PDB ID: 1wft
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10008
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of C-terminal fibronectin type III domain of mouse 1700129L13Rik protein

Deposition date:

2005-10-25

Original release date:

2006-11-06

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of C-terminal fibronectin type III domain of mouse 1700129L13Rik protein" not known ., .-..

Assembly members:

Assembly members:
FN3 domain, polymer, 123 residues, 13038.744 Da.

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P031015-19

Entity Sequences (FASTA):

Entity Sequences (FASTA):
FN3 domain: GSSGSSGPGAPSTVRISKNV DGIHLSWEPPTSPSGNILEY SAYLAIRTAQMQDNPSQLVF MRIYCGLKTSCTVTAGQLAN AHIDYTSRPAIVFRISAKNE KGYGPATQIRWLQGNSKSGP SSG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shift_1

Data type	Count
13C chemical shifts	459
15N chemical shifts	106
1H chemical shifts	737

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	FN3 domain	1

Entities:

Entity 1, FN3 domain 123 residues - 13038.744 Da.

1

GLY

SER

GLY

SER

GLY

PRO

GLY

ALA

2

PRO

SER

THR

VAL

ARG

ILE

SER

LYS

ASN

VAL

3

ASP

GLY

ILE

HIS

LEU

SER

TRP

GLU

PRO

4

THR

SER

PRO

SER

GLY

ASN

ILE

LEU

GLU

TYR

5

SER

ALA

TYR

LEU

ALA

ILE

ARG

THR

ALA

GLN

6

MET

GLN

ASP

ASN

PRO

SER

GLN

LEU

VAL

PHE

7

MET

ARG

ILE

TYR

CYS

GLY

LEU

LYS

THR

SER

8

CYS

THR

VAL

THR

ALA

GLY

GLN

LEU

ALA

ASN

9

ALA

HIS

ILE

ASP

TYR

THR

SER

ARG

PRO

ALA

10

ILE

VAL

PHE

ARG

ILE

SER

ALA

LYS

ASN

GLU

11

LYS

GLY

TYR

GLY

PRO

ALA

THR

GLN

ILE

ARG

12

TRP

LEU

GLN

GLY

ASN

SER

LYS

SER

GLY

PRO

13

SER

GLY

Samples:

sample_1: FN3 domain, [U-13C; U-15N], 1 mM; d-Tris HCl 20 mM; NaCl 200 mM; d-DTT 2 mM; NaN3 0.02%; D2O 10%; H2O 90%

condition_1: ionic strength: 0.22 M; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	not available	condition_1
3D 15N-separated NOESY	sample_1	not available	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121 - processing

NMRView v5.0.4 - data analysis

Kujira v0.8994 - data analysis

CYANA v2.0.17 - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WFT
DBJ	BAB24953
REF	XP_006514073 XP_011241845 XP_011241846 XP_011241847 XP_011241848
SP	Q9D968
AlphaFold	Q9D968