BMRB Entry 7370

Name: Backbone 1H and 15N chemical shift assignments of D. crassirhizoma Plastocyanin
Published: 2007-05-04

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR7370

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H and 15N chemical shift assignments of D. crassirhizoma Plastocyanin

Deposition date:

2007-02-08

Original release date:

2007-05-04

Authors:

Hulsker, Rinske; Ubbink, Marcellus

Citation:

Citation: Hulsker, Rinske; Mery, Annabelle; Thomassen, Ellen; Ranieri, Antonio; Sola, Marco; Verbeet, Martin; Kohzuma, Takamitsu; Ubbink, Marcellus. "Protonation of a histidine copper ligand in fern plastocyanin" J. Am. Chem. Soc. 129, 4423-4429 (2007).
PubMed: 17367139

Assembly members:

Assembly members:
plastocyanin, polymer, 102 residues, Formula weight is not available
CU1, non-polymer, 63.546 Da.

Natural source:

Natural source: Common Name: fern Taxonomy ID: not available Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Dryopteris crassirhizoma

Experimental source:

Experimental source: Production method: recombinant technology Vector: pETDPc

Entity Sequences (FASTA):

Entity Sequences (FASTA):
plastocyanin: AKVEVGDEVGNFKFYPDSIT VSAGEAVEFTLVGETGHNIV FDIPAGAPGTVASELKAASM DENDLLSEDEPSFKAKVSTP GTYTFYCTPHKSANMKGTLT VK

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
15N chemical shifts	95
1H chemical shifts	95

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	plastocyanin	1
2	COPPER (I) ION	2

Entities:

Entity 1, plastocyanin 102 residues - Formula weight is not available

1

ALA

LYS

VAL

GLU

VAL

GLY

ASP

GLU

VAL

GLY

2

ASN

PHE

LYS

PHE

TYR

PRO

ASP

SER

ILE

THR

3

VAL

SER

ALA

GLY

GLU

ALA

VAL

GLU

PHE

THR

4

LEU

VAL

GLY

GLU

THR

GLY

HIS

ASN

ILE

VAL

5

PHE

ASP

ILE

PRO

ALA

GLY

ALA

PRO

GLY

THR

6

VAL

ALA

SER

GLU

LEU

LYS

ALA

SER

MET

7

ASP

GLU

ASN

ASP

LEU

SER

GLU

ASP

GLU

8

PRO

SER

PHE

LYS

ALA

LYS

VAL

SER

THR

PRO

9

GLY

THR

TYR

THR

PHE

TYR

CYS

THR

PRO

HIS

10

LYS

SER

ALA

ASN

MET

LYS

GLY

THR

LEU

THR

11

VAL

LYS

Entity 2, COPPER (I) ION - Cu - 63.546 Da.

1

CU1

Samples:

sample_1: plastocyanin, [U-15N; U-13C], 1 ± 0.05 mM; sodium phosphate 10 mM

conditions_1: ionic strength: 10 mM; pH: 6.5; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N_HSQC	sample_1	not available	conditions_1
HNCACB	sample_1	not available	conditions_1
HNCO	sample_1	not available	conditions_1
HN(CA)CO	sample_1	not available	conditions_1

Software:

xwinnmr, Bruker - Acquisition

AZARA, freeware - Processing

Ansig-for-Windows, freeware - Assignment

NMR spectrometers:

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks