BMRB Entry 6849

Title:
Crassostrea gigas defensin
Deposition date:
2005-10-03
Original release date:
2007-01-29
Authors:
Gueguen, Yannick; Amaury, Herpin; Aumelas, Andre; Garnier, Julien; Fievet, Julie; Escoubas, Jean-Michel; Bulet, Philippe; Gonzales, Marcelo; Lelong, Christophe; Favrel, Pascal; Bachere, Evelyne
Citation:

Citation: Gueguen, Yannick; Herpin, Amaury; Aumelas, Andre; Garnier, Julien; Fievet, Julie; Escoubas, Jean-Michel; Bulet, Philippe; Gonzalez, Marcelo; Lelong, Christophe; Favrel, Pascal; Bachere, Evelyne. "Characterization of a Defensin from the Oyster Crassostrea gigas: RECOMBINANT PRODUCTION, FOLDING, SOLUTION STRUCTURE, ANTIMICROBIAL ACTIVITIES, AND GENE EXPRESSION."  J. Biol. Chem. 281, 313-323 (2006).
PubMed: 16246846

Assembly members:

Assembly members:
Grassostrea gigas defensin, polymer, 43 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Oyster   Taxonomy ID: 29159   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Crassostrea gigas

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Grassostrea gigas defensin: GFGCPGNQLKCNNHCKSISC RAGYCDAATLWLRCTCTDCN GKK

Data sets:
Data typeCount
1H chemical shifts279

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Grassostrea gigas defensin1

Entities:

Entity 1, Grassostrea gigas defensin 43 residues - Formula weight is not available

1   GLYPHEGLYCYSPROGLYASNGLNLEULYS
2   CYSASNASNHISCYSLYSSERILESERCYS
3   ARGALAGLYTYRCYSASPALAALATHRLEU
4   TRPLEUARGCYSTHRCYSTHRASPCYSASN
5   GLYLYSLYS

Samples:

sample_1: Grassostrea gigas defensin 0.8 ± 0.1 mM

sample_condition_1: pH: 3.25; temperature: 303 K

sample_condition_2: pH: 3.25; temperature: 283 K

Experiments:

NameSampleSample stateSample conditions
TOCSYnot availablenot availablenot available
COSY-DQFnot availablenot availablenot available
NOESYnot availablenot availablenot available

Software:

xwinnmr v3.1, bruker -

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

PDB
EMBL CAJ19280
GB ACQ72990 ACQ72991 ACQ72992 ACQ72993 ACQ72994