Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR53765

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Name: Za1-ZBP1
Published: 2026-05-14

Title:

Za1-ZBP1

Deposition date:

2026-05-08

Original release date:

2026-05-14

Authors:

Krall, Jeffrey; Henen, Morkos; Vogeli, Beat

Citation:

Citation: Krall, Jeffrey; Beck, Lily; Nichols, Parker; Vicens, Quentin; Henen, Morkos; Vogeli, Beat. "ZBP1's Inability to Convert Unmodified RNAs to the Z-form Underlies a Balanced Mechanism of RNA Recognition with ADAR1." bioRxiv ., .-. (2026).
PubMed: 42079158

Assembly members:

Assembly members:
entity_1, polymer, 70 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MAQAPADPGREGHLEQRILQ VLTEAGSPVKLAQLVKECQA PKRELNQVLYRMKKELKVSL TSPATWCLGG

Data sets:

heteronucl_T1_relaxation
- heteronucl_T1_relaxation_1
heteronucl_T1rho_relaxation
- heteronucl_T1rho_relaxation_1
heteronucl_T2_relaxation
- heteronucl_T2_relaxation_1

Data type	Count
T1 relaxation values	64
T1rho relaxation values	65
T2 relaxation values	64

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Za-ZBP1	1

Entities:

Entity 1, Za-ZBP1 70 residues - Formula weight is not available

1	MET	ALA	GLN	ALA	PRO	ALA	ASP	PRO	GLY	ARG
2	GLU	GLY	HIS	LEU	GLU	GLN	ARG	ILE	LEU	GLN
3	VAL	LEU	THR	GLU	ALA	GLY	SER	PRO	VAL	LYS
4	LEU	ALA	GLN	LEU	VAL	LYS	GLU	CYS	GLN	ALA
5	PRO	LYS	ARG	GLU	LEU	ASN	GLN	VAL	LEU	TYR
6	ARG	MET	LYS	LYS	GLU	LEU	LYS	VAL	SER	LEU
7	THR	SER	PRO	ALA	THR	TRP	CYS	LEU	GLY	GLY

Samples:

sample_1: Za-ZBP1, [U-100% 15N], 500 uM; potassium phosphate 20 mM; NaCl 100 mM; DTT 1 mM; EDTA 0.5 mM

sample_conditions_1: ionic strength: 120 mM; pH: 6.4; pressure: 1 atm; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
T1/R1 relaxation	sample_1	isotropic	sample_conditions_1
T1rho/R1rho relaxation	sample_1	isotropic	sample_conditions_1
T2/R2 relaxation	sample_1	isotropic	sample_conditions_1

Software:

CcpNMR - chemical shift assignment

TOPSPIN - collection

MATLAB - data analysis

NMR spectrometers:

Bruker Avance 600 MHz

1	MET	ALA	GLN	ALA	PRO	ALA	ASP	PRO	GLY	ARG
2	GLU	GLY	HIS	LEU	GLU	GLN	ARG	ILE	LEU	GLN
3	VAL	LEU	THR	GLU	ALA	GLY	SER	PRO	VAL	LYS
4	LEU	ALA	GLN	LEU	VAL	LYS	GLU	CYS	GLN	ALA
5	PRO	LYS	ARG	GLU	LEU	ASN	GLN	VAL	LEU	TYR
6	ARG	MET	LYS	LYS	GLU	LEU	LYS	VAL	SER	LEU
7	THR	SER	PRO	ALA	THR	TRP	CYS	LEU	GLY	GLY

1	MET	ALA	GLN	ALA	PRO	ALA	ASP	PRO	GLY	ARG
2	GLU	GLY	HIS	LEU	GLU	GLN	ARG	ILE	LEU	GLN
3	VAL	LEU	THR	GLU	ALA	GLY	SER	PRO	VAL	LYS
4	LEU	ALA	GLN	LEU	VAL	LYS	GLU	CYS	GLN	ALA
5	PRO	LYS	ARG	GLU	LEU	ASN	GLN	VAL	LEU	TYR
6	ARG	MET	LYS	LYS	GLU	LEU	LYS	VAL	SER	LEU
7	THR	SER	PRO	ALA	THR	TRP	CYS	LEU	GLY	GLY

BMRB Entry 53765