BMRB Entry 53020

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR53020
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
All files associated with the entry

Title:
Garvicin Q
Deposition date:
2025-04-10
Original release date:
2025-08-14
Authors:
Mallett, Tyler; Lamer, Tess; Sit, Clarissa; Mckay, Ryan; Van Belkum, Marco; Rainey, Jan; Aleksandrzak-Piekarczyk, Tamara; Vederas, John
Citation:

Citation: Mallett, Tyler; Lamer, Tess; Aleksadrzak-Piekarczyk, Tamara; Mckay, Ryan; Catenza, Karizza; Sit, Clarissa; Rainey, Jan; Towle-Straub, Kaitlyn; Vederas, John; van Belkum, Marco. "Solution Structure of the Broad-Spectrum Bacteriocin Garvicin Q"  Int. J. Mol. Sci. 26, 7846-7846 (2025).
PubMed: 40869166

Assembly members:

Assembly members:
entity_1, polymer, 50 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Lactococcus Garvieae   Taxonomy ID: 1363   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Lactococcus Garvieae

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pSPIH6

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: EYHLMNGANGYLTRVNGKYV YRVTKDPVSAVFGVISNGWG SAGAGFGPQH

Data sets:
Data typeCount
13C chemical shifts120
15N chemical shifts47
1H chemical shifts277

Time Domain Data

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Garvicin Q1

Entities:

Entity 1, Garvicin Q 50 residues - Formula weight is not available

1   GLUTYRHISLEUMETASNGLYALAASNGLY
2   TYRLEUTHRARGVALASNGLYLYSTYRVAL
3   TYRARGVALTHRLYSASPPROVALSERALA
4   VALPHEGLYVALILESERASNGLYTRPGLY
5   SERALAGLYALAGLYPHEGLYPROGLNHIS

Samples:

sample_1: Garvicin Q, [U-99% 13C; U-99% 15N], 1 ± 0.1 mM

sample_conditions_1: pH: 7.0; pressure: 1 atm; temperature: 300.5 K

Experiments:

NameSampleSample stateSample conditions
3D noesy-Chsqcsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D TOCSY-Nhsqcsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D noesy-Nhsqcsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1

Software:

X-PLOR NIH v3.9.8 - chemical shift calculation

CcpNMR v3.2.12 - chemical shift assignment

TALOS-N v4.01 - geometry optimization

NMR spectrometers:

  • Varian VNMRS 700 MHz
  • Bruker AVIIIHD 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks