BMRB Entry 52270

Title:
pfUCHL3
Deposition date:
2024-01-15
Original release date:
2024-04-30
Authors:
Bycroft, Mark
Citation:

Citation: King, Harry; Bycroft, Mark; Nguyen, Thanh-Binh; Kelly, Geoff; Vinogradov, Alexander; Rowling, Pamela; Stott, Katherine; Ascher, David; Suga, Hiroaki; Itzhaki, Laura; Artavanis-Tsakonas, Katerina. "Targeting the Plasmodium falciparum UCHL3 ubiquitin hydrolase using chemically constrained peptides"  Proc. Natl. Acad. Sci. U.S.A. 121, e2322923121-e2322923121 (2024).
PubMed: 38739798

Assembly members:

Assembly members:
entity_1, polymer, 235 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Plasmodium falciparum   Taxonomy ID: 5833   Superkingdom: Eukaryota   Kingdom: not available   Genus/species: Plasmodium falciparum

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: Pet28a

Data sets:
Data typeCount
13C chemical shifts566
15N chemical shifts209
1H chemical shifts209

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1pfUCHl31

Entities:

Entity 1, pfUCHl3 235 residues - Formula weight is not available

1   GLYSERHISMETALALYSASNASPILETRP
2   THRPROLEUGLUSERASNPROASPSERLEU
3   TYRLEUTYRSERCYSLYSLEUGLYGLNSER
4   LYSLEULYSPHEVALASPILETYRGLYPHE
5   ASNASNASPLEULEUASPMETILEPROGLN
6   PROVALGLNALAVALILEPHELEUTYRPRO
7   VALASNASPASNILEVALSERGLUASNASN
8   THRASNASPLYSHISASNLEULYSGLUASN
9   PHEASPASNVALTRPPHEILELYSGLNTYR
10   ILEPROASNSERCYSGLYTHRILEALALEU
11   LEUHISLEUTYRGLYASNLEUARGASNLYS
12   PHEGLULEUASPLYSASPSERVALLEUASP
13   ASPPHEPHEASNLYSVALASNGLUMETSER
14   ALAGLULYSARGGLYGLNGLULEULYSASN
15   ASNLYSSERILEGLUASNLEUHISHISGLU
16   PHECYSGLYGLNVALGLUASNARGASPASP
17   ILELEUASPVALASPTHRHISPHEILEVAL
18   PHEVALGLNILEGLUGLYLYSILEILEGLU
19   LEUASPGLYARGLYSASPHISPROTHRVAL
20   HISCYSPHETHRASNGLYASPASNPHELEU
21   TYRASPTHRGLYLYSILEILEGLNASPLYS
22   PHEILEGLULYSCYSLYSASPASPLEUARG
23   PHESERALALEUALAVALILEPROASNASP
24   ASNPHEASPILEILE

Samples:

sample_1: pfUCHL3, [U-99% 13C; U-99% 15N], 250 uM; potassium phosphate 20 mM; sodium chloride 150 mM

sample_conditions_1: ionic strength: 150 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D CBCANHsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCACOsample_1isotropicsample_conditions_1

Software:

TOPSPIN - processing

NMRFAM-SPARKY - peak picking

MARS - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 700 MHz

Related Database Links:

EMBL UCHL3_PLAF7

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks