BMRB Entry 52014

Title:
Solid-state NMR assignment of side-chain protons of HBV core protein at fast MAS and high field
Deposition date:
2023-07-06
Original release date:
2023-09-19
Authors:
Callon, Morgane; Luder, Dominique; Malar, Alexander; Wiegand, Thomas; Rimal, Vaclav; Lecoq, Lauriane; Bockmann, Anja; Samoson, Ago; Meier, Beat
Citation:

Citation: Callon, Morgane; Luder, Dominique; Malar, Alexander; Wiegand, Thomas; Rimal, Vaclav; Lecoq, Lauriane; Bockmann, Anja; Samoson, Ago; Meier, Beat. "High and fast: NMR protein\u2013proton side-chain assignments at 160 kHz and 1.2 GHz"  Chem. Sci. 14, 10824-10834 (2023).
PubMed: 37829013

Assembly members:

Assembly members:
entity_1, polymer, 149 residues, 17777 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-28a2

Data sets:
Data typeCount
13C chemical shifts322
15N chemical shifts108
1H chemical shifts414

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Cp1491

Entities:

Entity 1, Cp149 149 residues - 17777 Da.

Residues 1-149 of the full-length protein Cp183 containing 183 residues.

1   METASPILEASPPROTYRLYSGLUPHEGLY
2   ALATHRVALGLULEULEUSERPHELEUPRO
3   SERASPPHEPHEPROSERVALARGASPLEU
4   LEUASPTHRALASERALALEUTYRARGGLU
5   ALALEUGLUSERPROGLUHISCYSSERPRO
6   HISHISTHRALALEUARGGLNALAILELEU
7   CYSTRPGLYGLULEUMETTHRLEUALATHR
8   TRPVALGLYVALASNLEUGLUASPPROALA
9   SERARGASPLEUVALVALSERTYRVALASN
10   THRASNMETGLYLEULYSPHEARGGLNLEU
11   LEUTRPPHEHISILESERCYSLEUTHRPHE
12   GLYARGGLUTHRVALILEGLUTYRLEUVAL
13   SERPHEGLYVALTRPILEARGTHRPROPRO
14   ALATYRARGPROPROASNALAPROILELEU
15   SERTHRLEUPROGLUTHRTHRVALVAL

Samples:

sample_1: Hepatitis B virus capsid core protein Cp149, [U-99% 13C; U-99% 15N], 1 mg/mL

sample_conditions_1: ionic strength: 50 mM; pH: 7.5; pressure: 1 atm; temperature: 295 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C CPsample_1isotropicsample_conditions_1
3D hCCH-TOCSY C9sample_1isotropicsample_conditions_1
3D HcCH-TOCSY WALTZsample_1isotropicsample_conditions_1
3D hNCHsample_1isotropicsample_conditions_1
3D hCCH-TOCSY WALTZsample_1isotropicsample_conditions_1

Software:

TOPSPIN v4 - collection, processing

CcpNMR v2.5 - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

  • Bruker AVANCE NEO 1200 MHz

Related Database Links:

BMRB 27845 27317 51294 15969