BMRB Entry 51620

Title:
NMR assignment of NTD (44 - 180) of Nucleocapsid Protein of SARS-CoV-2
Deposition date:
2022-09-09
Original release date:
2022-10-14
Authors:
Schiavina, Marco; Tagliaferro, Giuseppe; Pontoriero, Letizia; Pierattelli, Roberta; Felli, Isabella Caterina
Citation:

Citation: Schiavina, Marco; Pontoriero, Letizia; Tagliaferro, Giuseppe; Pierattelli, Roberta; Felli, Isabella Caterina. "The Role of Disordered Regions in Orchestrating the Properties of Multidomain Proteins: The SARS-CoV-2 Nucleocapsid Protein and Its Interaction with Enoxaparin"  Biomolecules 12, 1302-1302 (2022).
PubMed: 36139141

Assembly members:

Assembly members:
entity_1, polymer, 137 residues, 14850 Da.

Natural source:

Natural source:   Common Name: SARS-CoV-2   Taxonomy ID: 2697049   Superkingdom: Viruses   Kingdom: not available   Genus/species: Betacoronavirus HCoV-SARS

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET28a(+)

Data sets:
Data typeCount
13C chemical shifts423
15N chemical shifts145
1H chemical shifts134

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1NTD1

Entities:

Entity 1, NTD 137 residues - 14850 Da.

1   GLYLEUPROASNASNTHRALASERTRPPHE
2   THRALALEUTHRGLNHISGLYLYSGLUASP
3   LEULYSPHEPROARGGLYGLNGLYVALPRO
4   ILEASNTHRASNSERSERPROASPASPGLN
5   ILEGLYTYRTYRARGARGALATHRARGARG
6   ILEARGGLYGLYASPGLYLYSMETLYSASP
7   LEUSERPROARGTRPTYRPHETYRTYRLEU
8   GLYTHRGLYPROGLUALAGLYLEUPROTYR
9   GLYALAASNLYSASPGLYILEILETRPVAL
10   ALATHRGLUGLYALALEUASNTHRPROLYS
11   ASPHISILEGLYTHRARGASNPROALAASN
12   ASNALAALAILEVALLEUGLNLEUPROGLN
13   GLYTHRTHRLEUPROLYSGLYPHETYRALA
14   GLUGLYSERARGGLYGLYSER

Samples:

sample_1: NTD (44-180) of N protein from SARS-CoV-2, [U-100% 13C; U-100% 15N], 450 uM; KPi 25 mM; KCl 150 mM; NaN3 0.03%

sample_conditions_1: ionic strength: 170 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 13C CACOsample_1isotropicsample_conditions_1
2D 13C CBCACOsample_1isotropicsample_conditions_1
2D 13C CONsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 13C (H)CBCACONsample_1isotropicsample_conditions_1

Software:

XEASY - chemical shift assignment

NMR spectrometers:

  • Bruker AVANCE III 950 MHz

Related Database Links:

UNP P0DTC9
AlphaFold P0DTC9

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks