BMRB Entry 51528

Title:
1H and 13C chemical shifts of a peptide derived from the membrane proximal external region of HIV-1 gp41 in DPC micelles
Deposition date:
2022-07-23
Original release date:
2022-11-28
Authors:
Jimenez, M. Angeles; Partida-Hanon, Angelica; Nieva, Jose
Citation:

Citation: Torralba, Johana; de la Arada, Igor; Partida-Hanon, Angelica; Rujas, Edurne; Arribas, Madalen; Insausti, Sara; Valotteau, Claire; Valle, Javier; Andreu, David; Caaveiro, Jose; Jimenez, Maria Angeles; Apellaniz, Beatriz; Redondo-Morata, Lorena; Nieva, Jose. "Molecular recognition of a membrane-anchored HIV-1 pan-neutralizing epitope"  Commun. Biol. 5, 1265-1265 (2022).
PubMed: 36400835

Assembly members:

Assembly members:
entity_1, polymer, 25 residues, 3213.9 Da.

Natural source:

Natural source:   Common Name: HIV-1   Taxonomy ID: 11676   Superkingdom: Viruses   Kingdom: not available   Genus/species: Lentivirus HIV-1

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: NWFDITNWLWYIKLFIMIVG KKKKK

Data sets:
Data typeCount
13C chemical shifts86
1H chemical shifts201

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1C-MPER-TMD6901

Entities:

Entity 1, C-MPER-TMD690 25 residues - 3213.9 Da.

The sequence corresponds to residues 671-690 of HIV-1 Env protein. It contains a C-terminal Lys-tag.

1   ASNTRPPHEASPILETHRASNTRPLEUTRP
2   TYRILELYSLEUPHEILEMETILEVALGLY
3   LYSLYSLYSLYSLYS

Samples:

sample_1: C-MPER-TMD690 0.9 mM; H2O 90%; D2O, [U-100% 2H], 10%; DPC, [U-99% 2H], 20 mM; HEPES 2 mM; DSS 0.1 mM

sample_2: C-MPER-TMD690 0.9 mM; D2O, [U-100% 2H], 100%; DPC, [U-99% 2H], 20 mM; HEPES 2 mM; DSS 0.1 mM

sample_conditions_1: ionic strength: 2 mM; pH: 7.0; pressure: 1 atm; temperature: 308 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
2D 1H-1H COSYsample_2isotropicsample_conditions_1
2D 1H-1H TOCSYsample_2isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_2isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_2isotropicsample_conditions_1

Software:

TOPSPIN - collection, processing

SPARKY - chemical shift assignment

CYANA - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz