BMRB Entry 51179

Name: Alpha X I domain NMR backbone assignment
Published: 2021-12-16

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51179

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Alpha X I domain NMR backbone assignment

Deposition date:

2021-11-16

Original release date:

2021-12-16

Authors:

Abousaway, Omar; Mazhar, Zahra; Aboagye, Collins; Sen, Mehmet

Citation:

Citation: Manandhar, Pragya; Abousaway, Omar; Mazhar, Zahra; Moussa, Zeinab; Aboagye, Collins; Lim, Daniel; Yu, Tannon; Byrnes, James; Briggs, James; Sen, Mehmet. "Heterotropic roles of divalent cations in the establishment of allostery and affinity maturation of integrin aXb2" Cell Rep. 40, 111254-111254 (2022).
PubMed: 36001965

Assembly members:

Assembly members:
entity_1, polymer, 189 residues, 21343.25 Da.
entity_MG, non-polymer, 24.305 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pet28a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: QDIVFLIDGSGSISSRNFAT MMNFVRAVISQFQRPSTQFS LMQFSNKFQTHFTFEEFRRS SNPLSLLASVHQLQGFTYTA TAIQNVVHRLFHASYGARRD ATKILIVITDGKKEGDSLDY KDVIPMADAAGIIRYAIGVG LAFQNRNSWKELNDIASKPS QEHIFKVEDFDALKDIQNQL KEKIFAIEG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	514
15N chemical shifts	167
1H chemical shifts	167

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	human alpha X integrin	1
2	Mg2+ ion	2

Entities:

Entity 1, human alpha X integrin 189 residues - 21343.25 Da.

1

GLN

ASP

ILE

VAL

PHE

LEU

ILE

ASP

GLY

SER

2

GLY

SER

ILE

SER

ARG

ASN

PHE

ALA

THR

3

MET

ASN

PHE

VAL

ARG

ALA

VAL

ILE

SER

4

GLN

PHE

GLN

ARG

PRO

SER

THR

GLN

PHE

SER

5

LEU

MET

GLN

PHE

SER

ASN

LYS

PHE

GLN

THR

6

HIS

PHE

THR

PHE

GLU

PHE

ARG

SER

7

SER

ASN

PRO

LEU

SER

LEU

ALA

SER

VAL

8

HIS

GLN

LEU

GLN

GLY

PHE

THR

TYR

THR

ALA

9

THR

ALA

ILE

GLN

ASN

VAL

HIS

ARG

LEU

10

PHE

HIS

ALA

SER

TYR

GLY

ALA

ARG

ASP

11

ALA

THR

LYS

ILE

LEU

ILE

VAL

ILE

THR

ASP

12

GLY

LYS

GLU

GLY

ASP

SER

LEU

ASP

TYR

13

LYS

ASP

VAL

ILE

PRO

MET

ALA

ASP

ALA

14

GLY

ILE

ARG

TYR

ALA

ILE

GLY

VAL

GLY

15

LEU

ALA

PHE

GLN

ASN

ARG

ASN

SER

TRP

LYS

16

GLU

LEU

ASN

ASP

ILE

ALA

SER

LYS

PRO

SER

17

GLN

GLU

HIS

ILE

PHE

LYS

VAL

GLU

ASP

PHE

18

ASP

ALA

LEU

LYS

ASP

ILE

GLN

ASN

GLN

LEU

19

LYS

GLU

LYS

ILE

PHE

ALA

ILE

GLU

GLY

Entity 2, Mg2+ ion - Mg - 24.305 Da.

1

MG

Samples:

sample_1: human alpha x integrin ligand binding domain, [U-100% 15N], 10 mg/mL; magnesium 1 mM

sample_conditions_1: ionic strength: 2 mM; pH: 6.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1

Software:

SPARKY v3.115 - chemical shift assignment, peak picking

NMRPipe - processing

NMR spectrometers:

Bruker Avance 800 MHz