BMRB Entry 51149

Title:
DENV2 S135A NS3pro/NS2B chemical shifts
Deposition date:
2021-10-21
Original release date:
2022-02-18
Authors:
Agback, Peter; Lesovoy, Dmitry; Han, Xiao; Sun, Renhua; Sandalova, Tatyana; Agback, Tatiana; Achour, Adnane; Orekhov, Vladislav
Citation:

Citation: Agback, Peter; Lesovoy, Dmitry; Han, Xiao; Sun, Renhua; Sandalova, Tatyana; Agback, Tatiana; Achour, Adnane; Orekhov, Vladislav. "1H, 13C and 15N resonance assignment of backbone and IVL-methyl side chain of the S135A mutant NS3pro/NS2B protein of Dengue II virus reveals unique secondary structure features in solution"  Biomol. NMR Assignments 16, 135-145 (2022).
PubMed: 35149939

Assembly members:

Assembly members:
entity_1, polymer, 185 residues, Formula weight is not available
entity_2, polymer, 51 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Dengue virus 2   Taxonomy ID: 11051   Superkingdom: Viruses   Kingdom: not available   Genus/species: Flavivirus Dengue virus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET21b

Data sets:
Data typeCount
13C chemical shifts721
15N chemical shifts216
1H chemical shifts642

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1NS3pro1
2NS2B2

Entities:

Entity 1, NS3pro 185 residues - Formula weight is not available

1   ALAGLYVALLEUTRPASPVALPROSERPRO
2   PROPROVALGLYLYSALAGLULEUGLUASP
3   GLYALATYRARGILELYSGLNLYSGLYILE
4   LEUGLYTYRSERGLNILEGLYALAGLYVAL
5   TYRLYSGLUGLYTHRPHEHISTHRMETTRP
6   HISVALTHRARGGLYALAVALLEUMETHIS
7   LYSGLYLYSARGILEGLUPROSERTRPALA
8   ASPVALLYSLYSASPLEUILESERTYRGLY
9   GLYGLYTRPLYSLEUGLUGLYGLUTRPLYS
10   GLUGLYGLUGLUVALGLNVALLEUALALEU
11   GLUPROGLYLYSASNPROARGALAVALGLN
12   THRLYSPROGLYLEUPHELYSTHRASNTHR
13   GLYTHRILEGLYALAVALSERLEUASPPHE
14   SERPROGLYTHRALAGLYSERPROILEVAL
15   ASPLYSLYSGLYLYSVALVALGLYLEUTYR
16   GLYASNGLYVALVALTHRARGSERGLYALA
17   TYRVALSERALAILEALAGLNTHRGLULYS
18   SERILEGLUASPASNPROGLUILEGLUASP
19   ASPILEPHEARGLYS

Entity 2, NS2B 51 residues - Formula weight is not available

1   HISMETLEUGLUALAASPLEUGLULEUGLU
2   ARGALAALAASPVALARGTRPGLUGLUGLN
3   ALAGLUILESERGLYSERSERPROILELEU
4   SERILETHRILESERGLUASPGLYSERMET
5   SERILELYSASNGLUGLUGLUGLUGLNTHR
6   LEU

Samples:

sample_1: NS3pro, [U-99% 13C; U-99% 15N], 0.8 mM; NS2B, [U-99% 13C; U-99% 15N], 0.8 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; NaN3 0.02%

sample_2: NS3pro, [U-100% 13C; U-100% 15N; U-80% 2H], 0.7 mM; NS2B, [U-100% 13C; U-100% 15N; U-80% 2H], 0.7 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; NaN3 0.02%

sample_3: NS3pro, [U-13C; U-15N; U-2H; 99% 1HD-Ile,Leu; 99% 1HG-Val], 0.4 mM; NS2B, [U-13C; U-15N; U-2H; 99% 1HD-Ile,Leu; 99% 1HG-Val], 0.4 mM; MES 20 mM; NaCl 100 mM; CaCl2 5 mM; NaN3 0.02%

sample_conditions_1: ionic strength: 0.125 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-15N TROSYsample_1isotropicsample_conditions_1
3D HNCOsample_2isotropicsample_conditions_1
3D CBCANHsample_2isotropicsample_conditions_1
HMCM(CGCB)CAsample_3isotropicsample_conditions_1

Software:

TOPSPIN v3.5 - collection

CcpNMR - chemical shift assignment

NMRPipe - processing

NMR spectrometers:

  • Bruker AVANCE III 600 MHz
  • Bruker AVANCE III 800 MHz
  • Bruker AVANCE III 900 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks