BMRB Entry 51094

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51094

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Title:
NISTmAb-scFv
Deposition date:
2021-09-22
Original release date:
2022-10-06
Authors:
Ghasriani, Houman; Ahmadi, Sara; Hodgson, Derek; Aubin, Yves
Citation:

Citation: Ghasriani, Houman; Ahmadi, Sara; Hodgson, Derek; Aubin, Yves. "Backbone and side-chain resonance assignments of the NISTmAb-scFv and antigen-binding study"  Biomol. NMR Assign. 16, 391-398 (2022).
PubMed: 36083574

Assembly members:

Assembly members:
entity_1, polymer, 252 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: PET15b10

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GSHMQVTLRESGPALVKPTQ TLTLTCTFSGFSLSTAGMSV GWIRQPPGKALEWLADIWWD DKKHYNPSLKDRLTISKDTS KNQVVLKVTNMDPADTATYY CARDMIFNFYFDVWGQGTTV TVSSGGGGSGGGGSGGGGSG GGGSDIQMTQSPSTLSASVG DRVTITCSASSRVGYMHWYQ QKPGKAPKLLIYDTSKLASG VPSRFSGSGSGTEFTLTISS LQPDDFATYYCFQGSGYPFT FGGGTKVEIKRT

Data sets:
Data typeCount
13C chemical shifts796
15N chemical shifts217
1H chemical shifts1150

Time Domain Data

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1NISTmAb-scFv1

Entities:

Entity 1, NISTmAb-scFv 252 residues - Formula weight is not available

1   GLYSERHISMETGLNVALTHRLEUARGGLU
2   SERGLYPROALALEUVALLYSPROTHRGLN
3   THRLEUTHRLEUTHRCYSTHRPHESERGLY
4   PHESERLEUSERTHRALAGLYMETSERVAL
5   GLYTRPILEARGGLNPROPROGLYLYSALA
6   LEUGLUTRPLEUALAASPILETRPTRPASP
7   ASPLYSLYSHISTYRASNPROSERLEULYS
8   ASPARGLEUTHRILESERLYSASPTHRSER
9   LYSASNGLNVALVALLEULYSVALTHRASN
10   METASPPROALAASPTHRALATHRTYRTYR
11   CYSALAARGASPMETILEPHEASNPHETYR
12   PHEASPVALTRPGLYGLNGLYTHRTHRVAL
13   THRVALSERSERGLYGLYGLYGLYSERGLY
14   GLYGLYGLYSERGLYGLYGLYGLYSERGLY
15   GLYGLYGLYSERASPILEGLNMETTHRGLN
16   SERPROSERTHRLEUSERALASERVALGLY
17   ASPARGVALTHRILETHRCYSSERALASER
18   SERARGVALGLYTYRMETHISTRPTYRGLN
19   GLNLYSPROGLYLYSALAPROLYSLEULEU
20   ILETYRASPTHRSERLYSLEUALASERGLY
21   VALPROSERARGPHESERGLYSERGLYSER
22   GLYTHRGLUPHETHRLEUTHRILESERSER
23   LEUGLNPROASPASPPHEALATHRTYRTYR
24   CYSPHEGLNGLYSERGLYTYRPROPHETHR
25   PHEGLYGLYGLYTHRLYSVALGLUILELYS
26   ARGTHR

Samples:

sample_1: NISTmAb-scFv, [U-13C; U-15N], 0.25 mM; phosphate buffer 20 mM

sample_conditions_1: ionic strength: 100 mM; pH: 6.0; pressure: 1 atm; temperature: 313 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D (H)CCH-TOCSYsample_1isotropicsample_conditions_1
3D HA(CO)NHsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D HBHANHsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D HCCH-COSYsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D (H)N(CA)NNHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HNHAsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D (Hb)Cb(CgCd)Hdsample_1isotropicsample_conditions_1
3D (Hb)Cb(CgCdCe)Hesample_1isotropicsample_conditions_1

Software:

SPARKY v3.135 - chemical shift assignment

NMR spectrometers:

  • Bruker AVANCE NEO 600 MHz
  • Bruker AVANCE III 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks